RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 XDHP47989 1333 aa25.25■■□□□ 1.63
SHROOM1-204ENST00000440118 PASKQ96RG2 1323 aa25.25■■□□□ 1.63
SHROOM1-204ENST00000440118 YDJCA8MPS7 323 aa25.24■■□□□ 1.63
SHROOM1-204ENST00000440118 F6X3S4 739 aa25.24■■□□□ 1.63
SHROOM1-204ENST00000440118 H7C1W4 665 aa25.24■■□□□ 1.63
SHROOM1-204ENST00000440118 ECE2O60344 883 aa25.24■■□□□ 1.63
SHROOM1-204ENST00000440118 DOK7Q18PE1 504 aa25.24■■□□□ 1.63
SHROOM1-204ENST00000440118 RTL9Q8NET4 1388 aa25.23■■□□□ 1.63
SHROOM1-204ENST00000440118 ZNF521Q96K83 1311 aa25.23■■□□□ 1.63
SHROOM1-204ENST00000440118 IGHMBP2P38935 993 aaKnown RBP25.23■■□□□ 1.63
SHROOM1-204ENST00000440118 PODXL2Q9NZ53 605 aa25.23■■□□□ 1.63
SHROOM1-204ENST00000440118 E9PSI1 815 aa25.22■■□□□ 1.63
SHROOM1-204ENST00000440118 TMEM88BA6NKF7 163 aa25.21■■□□□ 1.63
SHROOM1-204ENST00000440118 ITGBL1O95965 494 aaPredicted RBP25.21■■□□□ 1.63
SHROOM1-204ENST00000440118 SLC4A10Q6U841 1118 aa25.21■■□□□ 1.63
SHROOM1-204ENST00000440118 MKRN1Q9UHC7 482 aaKnown RBP25.21■■□□□ 1.63
SHROOM1-204ENST00000440118 CHMP3Q9Y3E7 222 aa25.21■■□□□ 1.63
SHROOM1-204ENST00000440118 TRPM7Q96QT4 1865 aa25.2■■□□□ 1.62
SHROOM1-204ENST00000440118 H7C1D1 291 aa25.2■■□□□ 1.62
SHROOM1-204ENST00000440118 PSMD14O00487 310 aa25.2■■□□□ 1.62
SHROOM1-204ENST00000440118 FAM161AQ3B820 660 aa25.2■■□□□ 1.62
SHROOM1-204ENST00000440118 SCN9AQ15858 1988 aa25.19■■□□□ 1.62
SHROOM1-204ENST00000440118 CCER2I3L3R5 266 aa25.19■■□□□ 1.62
SHROOM1-204ENST00000440118 ATP2B4P23634 1241 aa25.19■■□□□ 1.62
SHROOM1-204ENST00000440118 JMYQ8N9B5 988 aa25.19■■□□□ 1.62
SHROOM1-204ENST00000440118 MPHOSPH8Q99549 860 aa25.19■■□□□ 1.62
SHROOM1-204ENST00000440118 PLA2G12BQ9BX93 195 aa25.19■■□□□ 1.62
SHROOM1-204ENST00000440118 BSDC1Q9NW68 430 aaPredicted RBP25.19■■□□□ 1.62
SHROOM1-204ENST00000440118 ITGA6P23229 1130 aa25.18■■□□□ 1.62
SHROOM1-204ENST00000440118 MICALL2Q8IY33 904 aa25.18■■□□□ 1.62
SHROOM1-204ENST00000440118 CNOT7Q9UIV1 285 aaKnown RBP25.18■■□□□ 1.62
SHROOM1-204ENST00000440118 ZBTB12Q9Y330 459 aaPredicted RBP25.18■■□□□ 1.62
SHROOM1-204ENST00000440118 PSME4Q14997 1843 aa25.17■■□□□ 1.62
SHROOM1-204ENST00000440118 BEND3Q5T5X7 828 aa25.17■■□□□ 1.62
SHROOM1-204ENST00000440118 C9orf78Q9NZ63 289 aaPredicted RBP25.17■■□□□ 1.62
SHROOM1-204ENST00000440118 ABT1Q9ULW3 272 aaKnown RBP25.17■■□□□ 1.62
SHROOM1-204ENST00000440118 CASP7P55210 303 aa25.16■■□□□ 1.62
SHROOM1-204ENST00000440118 PCNTO95613 3336 aa25.15■■□□□ 1.62
SHROOM1-204ENST00000440118 ANKRD18BA2A2Z9 1011 aa25.15■■□□□ 1.62
SHROOM1-204ENST00000440118 RPS12P25398 132 aaKnown RBP25.15■■□□□ 1.62
SHROOM1-204ENST00000440118 SRCIN1Q9C0H9 1055 aa25.15■■□□□ 1.62
SHROOM1-204ENST00000440118 MINPP1Q9UNW1 487 aa25.15■■□□□ 1.62
SHROOM1-204ENST00000440118 CNTNAP1P78357 1384 aa25.15■■□□□ 1.62
SHROOM1-204ENST00000440118 GRM8O00222 908 aa25.14■■□□□ 1.62
SHROOM1-204ENST00000440118 KCNJ4P48050 445 aa25.14■■□□□ 1.62
SHROOM1-204ENST00000440118 DPF2Q92785 391 aa25.14■■□□□ 1.62
SHROOM1-204ENST00000440118 SHTN1A0MZ66 631 aa25.13■■□□□ 1.61
SHROOM1-204ENST00000440118 IFIT5Q13325 482 aaKnown RBP25.13■■□□□ 1.61
SHROOM1-204ENST00000440118 TAF7LQ5H9L4 462 aa25.13■■□□□ 1.61
SHROOM1-204ENST00000440118 TRPM4Q8TD43 1214 aa25.13■■□□□ 1.61
SHROOM1-204ENST00000440118 ANKRD2Q9GZV1 360 aa25.13■■□□□ 1.61
SHROOM1-204ENST00000440118 KCNQ5Q9NR82 932 aa25.13■■□□□ 1.61
SHROOM1-204ENST00000440118 MED23Q9ULK4 1368 aa25.13■■□□□ 1.61
SHROOM1-204ENST00000440118 ALDH1L1O75891 902 aa25.12■■□□□ 1.61
SHROOM1-204ENST00000440118 CCT4P50991 539 aaKnown RBP25.12■■□□□ 1.61
SHROOM1-204ENST00000440118 SLFN5Q08AF3 891 aa25.12■■□□□ 1.61
SHROOM1-204ENST00000440118 TRAF5O00463 557 aa25.11■■□□□ 1.61
SHROOM1-204ENST00000440118 CSF1RP07333 972 aa25.11■■□□□ 1.61
SHROOM1-204ENST00000440118 TBC1D10BQ4KMP7 808 aaPredicted RBP25.11■■□□□ 1.61
SHROOM1-204ENST00000440118 PAXIP1Q6ZW49 1069 aaPredicted RBP25.11■■□□□ 1.61
SHROOM1-204ENST00000440118 FBXW7Q969H0 707 aa25.11■■□□□ 1.61
SHROOM1-204ENST00000440118 A0A1B0GUL6 1792 aa25.1■■□□□ 1.61
SHROOM1-204ENST00000440118 RBM26Q5T8P6 1007 aaKnown RBP25.1■■□□□ 1.61
SHROOM1-204ENST00000440118 SAMD7Q7Z3H4 446 aa25.1■■□□□ 1.61
SHROOM1-204ENST00000440118 MRPL50Q8N5N7 158 aaKnown RBP25.1■■□□□ 1.61
SHROOM1-204ENST00000440118 ZC3H15Q8WU90 426 aaKnown RBP25.1■■□□□ 1.61
SHROOM1-204ENST00000440118 LEMD3Q9Y2U8 911 aa25.1■■□□□ 1.61
SHROOM1-204ENST00000440118 PTPRCP08575 1304 aa25.1■■□□□ 1.61
SHROOM1-204ENST00000440118 CCDC57Q2TAC2 916 aa25.09■■□□□ 1.61
SHROOM1-204ENST00000440118 CDCA7LQ96GN5 454 aa25.09■■□□□ 1.61
SHROOM1-204ENST00000440118 GLIS2Q9BZE0 524 aaPredicted RBP25.09■■□□□ 1.61
SHROOM1-204ENST00000440118 ZNF804BA4D1E1 1349 aa25.09■■□□□ 1.61
SHROOM1-204ENST00000440118 VIL1P09327 827 aaKnown RBP25.08■■□□□ 1.61
SHROOM1-204ENST00000440118 HSPA1AP0DMV8 641 aaKnown RBP25.08■■□□□ 1.61
SHROOM1-204ENST00000440118 HSPA1BP0DMV9 641 aaKnown RBP25.08■■□□□ 1.61
SHROOM1-204ENST00000440118 LMBR1LQ6UX01 489 aa25.08■■□□□ 1.61
SHROOM1-204ENST00000440118 PODNQ7Z5L7 613 aa25.08■■□□□ 1.61
SHROOM1-204ENST00000440118 ZNF408Q9H9D4 720 aa25.08■■□□□ 1.61
SHROOM1-204ENST00000440118 USP17L3A6NCW0 530 aa25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 USP17L4A6NCW7 530 aa25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 HIRAP54198 1017 aaPredicted RBP25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 FOXO4P98177 505 aa25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 FMR1Q06787 632 aaKnown RBP eCLIP25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 CHRNDQ07001 517 aa25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 KIF4BQ2VIQ3 1234 aa25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 DEFB115Q30KQ5 88 aa25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 RSBN1LQ6PCB5 846 aaPredicted RBP25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 USP17L1Q7RTZ2 530 aa25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 SSH1Q8WYL5 1049 aa25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 SMC4Q9NTJ3 1288 aa25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 POLR2AP24928 1970 aaKnown RBP25.07■■□□□ 1.6
SHROOM1-204ENST00000440118 CELF2O95319 508 aaKnown RBP25.06■■□□□ 1.6
SHROOM1-204ENST00000440118 IFFO2Q5TF58 517 aa25.06■■□□□ 1.6
SHROOM1-204ENST00000440118 CDC37L1Q7L3B6 337 aa25.06■■□□□ 1.6
SHROOM1-204ENST00000440118 AGBL3Q8NEM8 1001 aa25.06■■□□□ 1.6
SHROOM1-204ENST00000440118 WTIPA6NIX2 430 aaPredicted RBP25.05■■□□□ 1.6
SHROOM1-204ENST00000440118 VEGFBP49765 207 aa25.05■■□□□ 1.6
SHROOM1-204ENST00000440118 GRM1Q13255 1194 aa25.05■■□□□ 1.6
SHROOM1-204ENST00000440118 DCPSQ96C86 337 aaKnown RBP25.05■■□□□ 1.6
SHROOM1-204ENST00000440118 COA1Q9GZY4 146 aa25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms