RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 PRC1O43663 620 aa14.29□□□□□ -0.12
TCOF1-205ENST00000439160 CFAP100Q494V2 611 aa14.29□□□□□ -0.12
TCOF1-205ENST00000439160 CDCA7Q9BWT1 371 aaPredicted RBP14.29□□□□□ -0.12
TCOF1-205ENST00000439160 CCDC194A0A1B0GVG4 234 aa14.28□□□□□ -0.12
TCOF1-205ENST00000439160 RBM25P49756 843 aaKnown RBP14.28□□□□□ -0.12
TCOF1-205ENST00000439160 PROSER3Q2NL68 480 aa14.28□□□□□ -0.12
TCOF1-205ENST00000439160 PPFIBP1Q86W92 1011 aa14.28□□□□□ -0.12
TCOF1-205ENST00000439160 TFCP2L1Q9NZI6 479 aa14.28□□□□□ -0.12
TCOF1-205ENST00000439160 UBE2HP62256 183 aa14.28□□□□□ -0.12
TCOF1-205ENST00000439160 TTLL7Q6ZT98 887 aa14.28□□□□□ -0.12
TCOF1-205ENST00000439160 SMARCE1Q969G3 411 aa14.28□□□□□ -0.12
TCOF1-205ENST00000439160 CCDC24Q8N4L8 307 aa14.28□□□□□ -0.12
TCOF1-205ENST00000439160 NYXQ9GZU5 481 aa14.28□□□□□ -0.12
TCOF1-205ENST00000439160 BMP2KQ9NSY1 1161 aaPredicted RBP14.28□□□□□ -0.12
TCOF1-205ENST00000439160 MAP3K4Q9Y6R4 1608 aa14.28□□□□□ -0.12
TCOF1-205ENST00000439160 DNM1Q05193 864 aaKnown RBP14.27□□□□□ -0.12
TCOF1-205ENST00000439160 FAM177A1Q8N128 213 aaPredicted RBP14.27□□□□□ -0.12
TCOF1-205ENST00000439160 KAT14Q9H8E8 782 aa14.27□□□□□ -0.12
TCOF1-205ENST00000439160 ANO10Q9NW15 660 aa14.27□□□□□ -0.12
TCOF1-205ENST00000439160 WWC3Q9ULE0 1092 aa14.27□□□□□ -0.12
TCOF1-205ENST00000439160 DTNBO60941 627 aa14.27□□□□□ -0.12
TCOF1-205ENST00000439160 APOBRQ0VD83 1088 aa14.27□□□□□ -0.12
TCOF1-205ENST00000439160 ESR2Q92731 530 aa14.27□□□□□ -0.12
TCOF1-205ENST00000439160 TANGO6Q9C0B7 1094 aa14.27□□□□□ -0.12
TCOF1-205ENST00000439160 CCNL1Q9UK58 526 aaPredicted RBP14.27□□□□□ -0.12
TCOF1-205ENST00000439160 RNF17Q9BXT8 1623 aaKnown RBP14.27□□□□□ -0.12
TCOF1-205ENST00000439160 BCORL1Q5H9F3 1711 aa14.27□□□□□ -0.12
TCOF1-205ENST00000439160 ERVV-2B6SEH9 535 aa14.27□□□□□ -0.13
TCOF1-205ENST00000439160 GIMAP6Q6P9H5 292 aa14.27□□□□□ -0.13
TCOF1-205ENST00000439160 EDC3Q96F86 508 aaKnown RBP14.27□□□□□ -0.13
TCOF1-205ENST00000439160 KRT23Q9C075 422 aa14.27□□□□□ -0.13
TCOF1-205ENST00000439160 DDX19AQ9NUU7 478 aaKnown RBP14.27□□□□□ -0.13
TCOF1-205ENST00000439160 UNC13BO14795 1591 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 PRAMEF22A3QJZ6 481 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 BEND3Q5T5X7 828 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 SSH3Q8TE77 659 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 SGSM2O43147 1006 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 USP48Q86UV5 1035 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 CNNM3Q8NE01 707 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 XAGE2Q96GT9 111 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 ALG1Q9BT22 464 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 SMTNL1A8MU46 457 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 TAF5LO75529 589 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 GSPT1P15170 499 aaKnown RBP14.26□□□□□ -0.13
TCOF1-205ENST00000439160 KIF5BP33176 963 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 RUFY3Q7L099 469 aa14.26□□□□□ -0.13
TCOF1-205ENST00000439160 DHX32Q7L7V1 743 aaKnown RBP14.26□□□□□ -0.13
TCOF1-205ENST00000439160 TRPM1Q7Z4N2 1603 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 ISM2Q6H9L7 571 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 ZSCAN16Q9H4T2 348 aaPredicted RBP14.25□□□□□ -0.13
TCOF1-205ENST00000439160 CCDC87Q9NVE4 849 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 RAD50Q92878 1312 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 PDE8AO60658 829 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 F13A1P00488 732 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 ZNF853P0CG23 659 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 RXRAP19793 462 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 MAGEB6P1A0A0J9YX57 407 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 RAB3GAP1Q15042 981 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 ZSCAN23Q3MJ62 389 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 TRAPPC3LQ5T215 181 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 ERBB3P21860 1342 aa14.25□□□□□ -0.13
TCOF1-205ENST00000439160 CBFA2T2O43439 604 aa14.24□□□□□ -0.13
TCOF1-205ENST00000439160 PARP10Q53GL7 1025 aa14.24□□□□□ -0.13
TCOF1-205ENST00000439160 IFIT1BQ5T764 474 aaKnown RBP14.24□□□□□ -0.13
TCOF1-205ENST00000439160 CNNM2Q9H8M5 875 aa14.24□□□□□ -0.13
TCOF1-205ENST00000439160 ZNHIT6Q9NWK9 470 aaKnown RBP14.24□□□□□ -0.13
TCOF1-205ENST00000439160 RTN1Q16799 776 aa14.24□□□□□ -0.13
TCOF1-205ENST00000439160 CT47A1Q5JQC4 288 aaPredicted RBP14.24□□□□□ -0.13
TCOF1-205ENST00000439160 ZSCAN30Q86W11 494 aa14.24□□□□□ -0.13
TCOF1-205ENST00000439160 CLASP1Q7Z460 1538 aa14.24□□□□□ -0.13
TCOF1-205ENST00000439160 TCIRG1Q13488 830 aa14.24□□□□□ -0.13
TCOF1-205ENST00000439160 EAF2Q96CJ1 260 aaPredicted RBP14.24□□□□□ -0.13
TCOF1-205ENST00000439160 ZC3H12CQ9C0D7 883 aaKnown RBP14.24□□□□□ -0.13
TCOF1-205ENST00000439160 MBD4O95243 580 aa14.23□□□□□ -0.13
TCOF1-205ENST00000439160 ZNF165P49910 485 aa14.23□□□□□ -0.13
TCOF1-205ENST00000439160 TSPY3P0CV98 308 aa14.23□□□□□ -0.13
TCOF1-205ENST00000439160 TSPY8P0CW00 308 aa14.23□□□□□ -0.13
TCOF1-205ENST00000439160 PICALMQ13492 652 aa14.23□□□□□ -0.13
TCOF1-205ENST00000439160 CTAGE5O15320 804 aa14.23□□□□□ -0.13
TCOF1-205ENST00000439160 XRCC6P12956 609 aaKnown RBP eCLIP14.23□□□□□ -0.13
TCOF1-205ENST00000439160 GSTO1P78417 241 aa14.23□□□□□ -0.13
TCOF1-205ENST00000439160 GPS2Q13227 327 aa14.23□□□□□ -0.13
TCOF1-205ENST00000439160 MCM9Q9NXL9 1143 aa14.23□□□□□ -0.13
TCOF1-205ENST00000439160 SNX14Q9Y5W7 946 aa14.23□□□□□ -0.13
TCOF1-205ENST00000439160 TMEM132AQ24JP5 1023 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 TMTC2Q8N394 836 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 LRRIQ1Q96JM4 1722 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 SYT1P21579 422 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 ASAP1Q9ULH1 1129 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 KIF24Q5T7B8 1368 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 RIMBP2O15034 1052 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 HLA-DOAP06340 250 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 PUM3Q15397 648 aaKnown RBP14.22□□□□□ -0.13
TCOF1-205ENST00000439160 KBTBD3Q8NAB2 608 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 CAGE1Q8TC20 777 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 SLC27A2O14975 620 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 ZNF804AQ7Z570 1209 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 CNBD1Q8NA66 436 aa14.22□□□□□ -0.13
TCOF1-205ENST00000439160 INTS4Q96HW7 963 aaKnown RBP14.22□□□□□ -0.13
TCOF1-205ENST00000439160 ZKSCAN3Q9BRR0 538 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms