RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 CCDC8Q9H0W5 538 aaPredicted RBP12.71□□□□□ -0.38
SCN4A-201ENST00000435607 GEN1Q17RS7 908 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 MICU3Q86XE3 530 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 CCDC50Q8IVM0 306 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 PICALMQ13492 652 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 TRIM6Q9C030 488 aaPredicted RBP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 GRPEL1Q9HAV7 217 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 RTCBQ9Y3I0 505 aaKnown RBP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 ATAD2BQ9ULI0 1458 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 SNRPA1P09661 255 aaKnown RBP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 ATP2B3Q16720 1220 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 CEP128Q6ZU80 1094 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 FAM114A2Q9NRY5 505 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 LIMCH1Q9UPQ0 1083 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 CALML3P27482 149 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 NAPAP54920 295 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 CCDC125Q86Z20 511 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 RRP36Q96EU6 259 aaKnown RBP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 PTPRCP08575 1304 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 NAIPQ13075 1403 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 TMPOP42166 694 aaKnown RBP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 CCT2P78371 535 aaKnown RBP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 NAA16Q6N069 864 aaPredicted RBP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 DKC1O60832 514 aaKnown RBP eCLIP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 STK10O94804 968 aaKnown RBP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 CAVIN2O95810 425 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 RBM25P49756 843 aaKnown RBP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 ARHGEF6Q15052 776 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 ERCC6LQ2NKX8 1250 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 TPTE2Q6XPS3 522 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 AFAP1L2Q8N4X5 818 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 CCDC114Q96M63 670 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 NAP1L4Q99733 375 aaKnown RBP12.7□□□□□ -0.38
SCN4A-201ENST00000435607 TTC21BQ7Z4L5 1316 aa12.7□□□□□ -0.38
SCN4A-201ENST00000435607 CYP7A1P22680 504 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 KIFC2Q96AC6 838 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 TCIRG1Q13488 830 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 STX10O60499 249 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 ALDH1L2Q3SY69 923 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 ABCC11Q96J66 1382 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 N4BP3O15049 544 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 GABPAQ06546 454 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 SLC4A8Q2Y0W8 1093 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 KIF22Q14807 665 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 ANKS4BQ8N8V4 417 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 TRIM7Q9C029 511 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 PSMA7O14818 248 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 SPAG1Q07617 926 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 C8orf37Q96NL8 207 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 SLC5A4Q9NY91 659 aa12.69□□□□□ -0.38
SCN4A-201ENST00000435607 EIF6P56537 245 aaKnown RBP12.68□□□□□ -0.38
SCN4A-201ENST00000435607 CSRNP2Q9H175 543 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 NCOA2Q15596 1464 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 RAPGEF3O95398 923 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 MCM10Q7L590 875 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 MIS18AQ9NYP9 233 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 ORC3Q9UBD5 711 aaPredicted RBP12.68□□□□□ -0.38
SCN4A-201ENST00000435607 CAMSAP2Q08AD1 1489 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 WDR44Q5JSH3 913 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 STK32BQ9NY57 414 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 ERICH4A6NGS2 130 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 KIFAP3Q92845 792 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 MAP3K2Q9Y2U5 619 aa12.68□□□□□ -0.38
SCN4A-201ENST00000435607 RAB3IPQ96QF0 476 aaPredicted RBP12.68□□□□□ -0.38
SCN4A-201ENST00000435607 GNAT2P19087 354 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 RTN1Q16799 776 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 GJA3Q9Y6H8 435 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 OPA1O60313 960 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 HSPA4P34932 840 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 RBM10P98175 930 aaKnown RBP12.67□□□□□ -0.38
SCN4A-201ENST00000435607 NOP56O00567 594 aaKnown RBP12.67□□□□□ -0.38
SCN4A-201ENST00000435607 RSPH3Q86UC2 560 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 ZSCAN16Q9H4T2 348 aaPredicted RBP12.67□□□□□ -0.38
SCN4A-201ENST00000435607 FAM184BQ9ULE4 1060 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 ATP6V0A2Q9Y487 856 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 DAPK3O43293 454 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 INF2Q27J81 1249 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 ZBTB43O43298 467 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 GJC1P36383 396 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 SMTNP53814 917 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 DDB1Q16531 1140 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 KRT79Q5XKE5 535 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 RPUSD2Q8IZ73 545 aaKnown RBP12.67□□□□□ -0.38
SCN4A-201ENST00000435607 MPNDQ8N594 471 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 ANKRD2Q9GZV1 360 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 GNA11P29992 359 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 MAP7Q14244 749 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 FNBP1Q96RU3 617 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 AMOTL2Q9Y2J4 779 aa12.67□□□□□ -0.38
SCN4A-201ENST00000435607 E7EVH7 732 aa12.66□□□□□ -0.38
SCN4A-201ENST00000435607 SRGAP1Q7Z6B7 1085 aa12.66□□□□□ -0.38
SCN4A-201ENST00000435607 NSD3Q9BZ95 1437 aa12.66□□□□□ -0.38
SCN4A-201ENST00000435607 BICDL2A1A5D9 508 aa12.66□□□□□ -0.38
SCN4A-201ENST00000435607 USHBP1Q8N6Y0 703 aa12.66□□□□□ -0.38
SCN4A-201ENST00000435607 ECHDC1Q9NTX5 307 aa12.66□□□□□ -0.38
SCN4A-201ENST00000435607 SLC4A4Q9Y6R1 1079 aa12.66□□□□□ -0.38
SCN4A-201ENST00000435607 SMARCA4P51532 1647 aa12.66□□□□□ -0.38
SCN4A-201ENST00000435607 CCDC160A6NGH7 325 aa12.66□□□□□ -0.38
SCN4A-201ENST00000435607 NR1I2O75469 434 aa12.66□□□□□ -0.38
SCN4A-201ENST00000435607 ECM2O94769 699 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms