RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 BNIP3LO60238 219 aa9.27□□□□□ -0.93
USP54-206ENST00000433394 IGSF3O75054 1194 aa9.27□□□□□ -0.93
USP54-206ENST00000433394 MAP3K6O95382 1288 aa9.27□□□□□ -0.93
USP54-206ENST00000433394 ITGA6P23229 1130 aa9.27□□□□□ -0.93
USP54-206ENST00000433394 DBN1Q16643 649 aa9.27□□□□□ -0.93
USP54-206ENST00000433394 KIAA0319Q5VV43 1072 aa9.27□□□□□ -0.93
USP54-206ENST00000433394 ZNF654Q8IZM8 581 aa9.27□□□□□ -0.93
USP54-206ENST00000433394 ABHD17AQ96GS6 310 aa9.27□□□□□ -0.93
USP54-206ENST00000433394 TRIM47Q96LD4 638 aa9.27□□□□□ -0.93
USP54-206ENST00000433394 GGT7Q9UJ14 662 aa9.27□□□□□ -0.93
USP54-206ENST00000433394 USP31Q70CQ4 1352 aa9.26□□□□□ -0.93
USP54-206ENST00000433394 GTPBP3Q969Y2 492 aaKnown RBP9.26□□□□□ -0.93
USP54-206ENST00000433394 ZNF775Q96BV0 537 aaPredicted RBP9.26□□□□□ -0.93
USP54-206ENST00000433394 LIN7BQ9HAP6 207 aa9.26□□□□□ -0.93
USP54-206ENST00000433394 CDC14CA4D256 554 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 CTSHP09668 335 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 CD33P20138 364 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 FGFR3P22607 806 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 VEGFBP49765 207 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 PWP1Q13610 501 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 GRM2Q14416 872 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 FAM182BQ5T319 152 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 LDLRAD1Q5T700 205 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 DTHD1Q6ZMT9 781 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 DHX32Q7L7V1 743 aaKnown RBP9.25□□□□□ -0.93
USP54-206ENST00000433394 USP48Q86UV5 1035 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 METTL16Q86W50 562 aaKnown RBP9.25□□□□□ -0.93
USP54-206ENST00000433394 VPS37DQ86XT2 251 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 ZNF837Q96EG3 531 aaPredicted RBP9.25□□□□□ -0.93
USP54-206ENST00000433394 CAPN10Q9HC96 672 aa9.25□□□□□ -0.93
USP54-206ENST00000433394 PPP1R1BQ9UD71 204 aaPredicted RBP9.25□□□□□ -0.93
USP54-206ENST00000433394 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.25□□□□□ -0.93
USP54-206ENST00000433394 A0A1W2PP55 124 aa9.24□□□□□ -0.93
USP54-206ENST00000433394 FAM177BA6PVY3 158 aa9.24□□□□□ -0.93
USP54-206ENST00000433394 CYP2E1P05181 493 aaPredicted RBP9.24□□□□□ -0.93
USP54-206ENST00000433394 RLBP1P12271 317 aa9.24□□□□□ -0.93
USP54-206ENST00000433394 SALL4Q9UJQ4 1053 aa9.24□□□□□ -0.93
USP54-206ENST00000433394 PPM1HQ9ULR3 514 aa9.24□□□□□ -0.93
USP54-206ENST00000433394 SHROOM4Q9ULL8 1493 aa9.23□□□□□ -0.93
USP54-206ENST00000433394 GHRHP01286 108 aa9.23□□□□□ -0.93
USP54-206ENST00000433394 NRLP54845 237 aa9.23□□□□□ -0.93
USP54-206ENST00000433394 FCGRTP55899 365 aa9.23□□□□□ -0.93
USP54-206ENST00000433394 DIEXFQ68CQ4 756 aaKnown RBP9.23□□□□□ -0.93
USP54-206ENST00000433394 OSMRQ99650 979 aa9.23□□□□□ -0.93
USP54-206ENST00000433394 NDFIP2Q9NV92 336 aa9.23□□□□□ -0.93
USP54-206ENST00000433394 INPP5FQ9Y2H2 1132 aa9.23□□□□□ -0.93
USP54-206ENST00000433394 PTPN12Q05209 780 aaKnown RBP9.22□□□□□ -0.93
USP54-206ENST00000433394 MEI1Q5TIA1 1274 aa9.22□□□□□ -0.93
USP54-206ENST00000433394 PRPF40BQ6NWY9 871 aaKnown RBP9.22□□□□□ -0.93
USP54-206ENST00000433394 SV2AQ7L0J3 742 aa9.22□□□□□ -0.93
USP54-206ENST00000433394 NOC4LQ9BVI4 516 aaKnown RBP9.22□□□□□ -0.93
USP54-206ENST00000433394 OXCT2Q9BYC2 517 aaPredicted RBP9.22□□□□□ -0.93
USP54-206ENST00000433394 IGFLR1Q9H665 355 aa9.22□□□□□ -0.93
USP54-206ENST00000433394 STRN4Q9NRL3 753 aa9.22□□□□□ -0.93
USP54-206ENST00000433394 ZFATQ9P243 1243 aa9.22□□□□□ -0.93
USP54-206ENST00000433394 NSFL1CQ9UNZ2 370 aaKnown RBP9.22□□□□□ -0.93
USP54-206ENST00000433394 AKAP2Q9Y2D5 859 aa9.22□□□□□ -0.93
USP54-206ENST00000433394 POTECB2RU33 542 aa9.21□□□□□ -0.94
USP54-206ENST00000433394 C11orf95C9JLR9 678 aaPredicted RBP9.21□□□□□ -0.94
USP54-206ENST00000433394 KIF4AO95239 1232 aa9.21□□□□□ -0.94
USP54-206ENST00000433394 HOXD8P13378 290 aaPredicted RBP9.21□□□□□ -0.94
USP54-206ENST00000433394 TBC1D8BQ0IIM8 1120 aa9.21□□□□□ -0.94
USP54-206ENST00000433394 CCDC85BQ15834 202 aaPredicted RBP9.21□□□□□ -0.94
USP54-206ENST00000433394 RELL1Q8IUW5 271 aa9.21□□□□□ -0.94
USP54-206ENST00000433394 MICALL1Q8N3F8 863 aa9.21□□□□□ -0.94
USP54-206ENST00000433394 UBXN4Q92575 508 aa9.21□□□□□ -0.94
USP54-206ENST00000433394 NSUN5Q96P11 429 aaKnown RBP9.21□□□□□ -0.94
USP54-206ENST00000433394 CEP44Q9C0F1 390 aa9.21□□□□□ -0.94
USP54-206ENST00000433394 DACH1Q9UI36 760 aa9.21□□□□□ -0.94
USP54-206ENST00000433394 TMEM238LA0A1B0GVL6 79 aa9.2□□□□□ -0.94
USP54-206ENST00000433394 BMP4P12644 408 aa9.2□□□□□ -0.94
USP54-206ENST00000433394 RAD51AP2Q09MP3 1159 aa9.2□□□□□ -0.94
USP54-206ENST00000433394 UBAP2LQ14157 1087 aaKnown RBP9.2□□□□□ -0.94
USP54-206ENST00000433394 RAB44Q7Z6P3 723 aaPredicted RBP9.2□□□□□ -0.94
USP54-206ENST00000433394 SLC30A3Q99726 388 aa9.2□□□□□ -0.94
USP54-206ENST00000433394 TANGO6Q9C0B7 1094 aa9.2□□□□□ -0.94
USP54-206ENST00000433394 UBE2OQ9C0C9 1292 aaKnown RBP9.2□□□□□ -0.94
USP54-206ENST00000433394 LATS2Q9NRM7 1088 aa9.2□□□□□ -0.94
USP54-206ENST00000433394 CUEDC1Q9NWM3 386 aaPredicted RBP9.2□□□□□ -0.94
USP54-206ENST00000433394 DDX41Q9UJV9 622 aaKnown RBP9.2□□□□□ -0.94
USP54-206ENST00000433394 LOC102724428A0A0B4J2F2 783 aa9.19□□□□□ -0.94
USP54-206ENST00000433394 SMNDC1O75940 238 aaKnown RBP eCLIP9.19□□□□□ -0.94
USP54-206ENST00000433394 THBS1P07996 1170 aa9.19□□□□□ -0.94
USP54-206ENST00000433394 SIK1P57059 783 aa9.19□□□□□ -0.94
USP54-206ENST00000433394 GPLD1P80108 840 aa9.19□□□□□ -0.94
USP54-206ENST00000433394 SLC43A3Q8NBI5 491 aa9.19□□□□□ -0.94
USP54-206ENST00000433394 ZKSCAN3Q9BRR0 538 aa9.19□□□□□ -0.94
USP54-206ENST00000433394 GMPR2Q9P2T1 348 aaKnown RBP9.19□□□□□ -0.94
USP54-206ENST00000433394 LMNB1P20700 586 aa9.18□□□□□ -0.94
USP54-206ENST00000433394 PEAR1Q5VY43 1037 aaPredicted RBP9.18□□□□□ -0.94
USP54-206ENST00000433394 CCNJLQ8IV13 435 aa9.18□□□□□ -0.94
USP54-206ENST00000433394 ACBD3Q9H3P7 528 aa9.18□□□□□ -0.94
USP54-206ENST00000433394 EIF2AK2P19525 551 aaKnown RBP9.17□□□□□ -0.94
USP54-206ENST00000433394 ATP2B1P20020 1258 aa9.17□□□□□ -0.94
USP54-206ENST00000433394 ZNF394Q53GI3 561 aa9.17□□□□□ -0.94
USP54-206ENST00000433394 SV2BQ7L1I2 683 aa9.17□□□□□ -0.94
USP54-206ENST00000433394 SYT9Q86SS6 491 aa9.17□□□□□ -0.94
USP54-206ENST00000433394 VWA5B2Q8N398 1253 aa9.17□□□□□ -0.94
USP54-206ENST00000433394 TRPM4Q8TD43 1214 aa9.17□□□□□ -0.94
USP54-206ENST00000433394 ASAP3Q8TDY4 903 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms