RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 CES1P23141 567 aa10.21□□□□□ -0.77
CCDC88A-206ENST00000430086 MLLT1Q03111 559 aaPredicted RBP10.21□□□□□ -0.77
CCDC88A-206ENST00000430086 C20orf204Q6ZNR8 217 aa10.21□□□□□ -0.77
CCDC88A-206ENST00000430086 FAM35AQ86V20 835 aa10.21□□□□□ -0.77
CCDC88A-206ENST00000430086 FRRS1LQ9P0K9 344 aa10.21□□□□□ -0.77
CCDC88A-206ENST00000430086 NAGPAQ9UK23 515 aa10.21□□□□□ -0.77
CCDC88A-206ENST00000430086 COL13A1Q5TAT6 717 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-206ENST00000430086 NSUN5Q96P11 429 aaKnown RBP10.2□□□□□ -0.78
CCDC88A-206ENST00000430086 ZFYVE28Q9HCC9 887 aa10.2□□□□□ -0.78
CCDC88A-206ENST00000430086 PRDM6Q9NQX0 595 aa10.2□□□□□ -0.78
CCDC88A-206ENST00000430086 SALL4Q9UJQ4 1053 aa10.2□□□□□ -0.78
CCDC88A-206ENST00000430086 TREHO43280 583 aa10.19□□□□□ -0.78
CCDC88A-206ENST00000430086 CPB1P15086 417 aa10.19□□□□□ -0.78
CCDC88A-206ENST00000430086 DGKGP49619 791 aa10.19□□□□□ -0.78
CCDC88A-206ENST00000430086 DSC3Q14574 896 aa10.19□□□□□ -0.78
CCDC88A-206ENST00000430086 MICALL1Q8N3F8 863 aa10.19□□□□□ -0.78
CCDC88A-206ENST00000430086 TTC9Q92623 222 aa10.19□□□□□ -0.78
CCDC88A-206ENST00000430086 NIF3L1Q9GZT8 377 aa10.19□□□□□ -0.78
CCDC88A-206ENST00000430086 J3QW42 95 aa10.18□□□□□ -0.78
CCDC88A-206ENST00000430086 ALBP02768 609 aa10.18□□□□□ -0.78
CCDC88A-206ENST00000430086 TRIM26Q12899 539 aaPredicted RBP10.18□□□□□ -0.78
CCDC88A-206ENST00000430086 PERM1Q5SV97 790 aa10.18□□□□□ -0.78
CCDC88A-206ENST00000430086 PSAPL1Q6NUJ1 521 aa10.18□□□□□ -0.78
CCDC88A-206ENST00000430086 HFE2Q6ZVN8 426 aa10.18□□□□□ -0.78
CCDC88A-206ENST00000430086 LPIN3Q9BQK8 851 aa10.18□□□□□ -0.78
CCDC88A-206ENST00000430086 KANSL3Q9P2N6 904 aa10.18□□□□□ -0.78
CCDC88A-206ENST00000430086 M0R082 166 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 EREGO14944 169 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 GHRHP01286 108 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 EIF2AK2P19525 551 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 CCDC27Q2M243 656 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 ELMSAN1Q6PJG2 1045 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 CEP120Q8N960 986 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 ZNF417Q8TAU3 575 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 ZNF587Q96SQ5 575 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 RBSNQ9H1K0 784 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 DNAJC25Q9H1X3 360 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 RRAGCQ9HB90 399 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 AMOTL2Q9Y2J4 779 aa10.17□□□□□ -0.78
CCDC88A-206ENST00000430086 PLCB3Q01970 1234 aa10.16□□□□□ -0.78
CCDC88A-206ENST00000430086 ORC1Q13415 861 aa10.16□□□□□ -0.78
CCDC88A-206ENST00000430086 NCAPG2Q86XI2 1143 aa10.16□□□□□ -0.78
CCDC88A-206ENST00000430086 SPACA7Q96KW9 195 aa10.16□□□□□ -0.78
CCDC88A-206ENST00000430086 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-206ENST00000430086 CPNE3O75131 537 aaKnown RBP10.15□□□□□ -0.78
CCDC88A-206ENST00000430086 RGS9O75916 674 aaPredicted RBP10.15□□□□□ -0.78
CCDC88A-206ENST00000430086 SNRPNP63162 240 aaKnown RBP10.15□□□□□ -0.78
CCDC88A-206ENST00000430086 LINC00114Q6XXX2 140 aa10.15□□□□□ -0.78
CCDC88A-206ENST00000430086 PLD4Q96BZ4 506 aa10.15□□□□□ -0.78
CCDC88A-206ENST00000430086 EIF1AYO14602 144 aaKnown RBP10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 LILRB5O75023 590 aa10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 EDN3P14138 238 aa10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 FMR1Q06787 632 aaKnown RBP eCLIP10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 DNAJC14Q6Y2X3 702 aaPredicted RBP10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 BEND7Q8N7W2 519 aaPredicted RBP10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 NUDT8Q8WV74 236 aa10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 SCARF2Q96GP6 870 aaPredicted RBP10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 CSRNP1Q96S65 589 aa10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 SMG9Q9H0W8 520 aaKnown RBP10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 JPH1Q9HDC5 661 aaPredicted RBP10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 MKL2Q9ULH7 1088 aa10.14□□□□□ -0.79
CCDC88A-206ENST00000430086 PIK3R2O00459 728 aa10.13□□□□□ -0.79
CCDC88A-206ENST00000430086 COL9A3Q14050 684 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-206ENST00000430086 PODNQ7Z5L7 613 aa10.13□□□□□ -0.79
CCDC88A-206ENST00000430086 GALNT12Q8IXK2 581 aa10.13□□□□□ -0.79
CCDC88A-206ENST00000430086 AFF1P51825 1210 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-206ENST00000430086 COL19A1Q14993 1142 aa10.12□□□□□ -0.79
CCDC88A-206ENST00000430086 GRIK5Q16478 980 aa10.12□□□□□ -0.79
CCDC88A-206ENST00000430086 TMCO4Q5TGY1 634 aa10.12□□□□□ -0.79
CCDC88A-206ENST00000430086 USPL1Q5W0Q7 1092 aa10.12□□□□□ -0.79
CCDC88A-206ENST00000430086 C8orf86Q6ZUL3 223 aa10.12□□□□□ -0.79
CCDC88A-206ENST00000430086 PBX4Q9BYU1 374 aa10.12□□□□□ -0.79
CCDC88A-206ENST00000430086 CNTNAP5Q8WYK1 1306 aa10.11□□□□□ -0.79
CCDC88A-206ENST00000430086 ANKRD33BA6NCL7 494 aa10.11□□□□□ -0.79
CCDC88A-206ENST00000430086 GNB5O14775 395 aa10.11□□□□□ -0.79
CCDC88A-206ENST00000430086 NID1P14543 1247 aa10.11□□□□□ -0.79
CCDC88A-206ENST00000430086 DZANK1Q9NVP4 752 aa10.11□□□□□ -0.79
CCDC88A-206ENST00000430086 NFKBIEO00221 500 aa10.1□□□□□ -0.79
CCDC88A-206ENST00000430086 SMNDC1O75940 238 aaKnown RBP eCLIP10.1□□□□□ -0.79
CCDC88A-206ENST00000430086 POLR3DP05423 398 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-206ENST00000430086 ERCC3P19447 782 aa10.1□□□□□ -0.79
CCDC88A-206ENST00000430086 ATP11AP98196 1134 aa10.1□□□□□ -0.79
CCDC88A-206ENST00000430086 ENOX2Q16206 610 aaKnown RBP10.1□□□□□ -0.79
CCDC88A-206ENST00000430086 PEAR1Q5VY43 1037 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-206ENST00000430086 CACTIN-AS1Q8N1I8 211 aa10.1□□□□□ -0.79
CCDC88A-206ENST00000430086 RASSF4Q9H2L5 321 aa10.1□□□□□ -0.79
CCDC88A-206ENST00000430086 ILDR2Q71H61 639 aa10.09□□□□□ -0.79
CCDC88A-206ENST00000430086 CCDC74AQ96AQ1 378 aa10.09□□□□□ -0.79
CCDC88A-206ENST00000430086 ACPPP15309 386 aa10.08□□□□□ -0.8
CCDC88A-206ENST00000430086 CEP135Q66GS9 1140 aa10.08□□□□□ -0.8
CCDC88A-206ENST00000430086 TMEM102Q8N9M5 508 aaPredicted RBP10.08□□□□□ -0.8
CCDC88A-206ENST00000430086 TRIM11Q96F44 468 aa10.08□□□□□ -0.8
CCDC88A-206ENST00000430086 OSMRQ99650 979 aa10.08□□□□□ -0.8
CCDC88A-206ENST00000430086 ZKSCAN3Q9BRR0 538 aa10.08□□□□□ -0.8
CCDC88A-206ENST00000430086 PNMA6FA0A0J9YX94 578 aa10.07□□□□□ -0.8
CCDC88A-206ENST00000430086 P4HBP07237 508 aaKnown RBP10.07□□□□□ -0.8
CCDC88A-206ENST00000430086 KIAA0319Q5VV43 1072 aa10.07□□□□□ -0.8
CCDC88A-206ENST00000430086 NPAS4Q8IUM7 802 aa10.07□□□□□ -0.8
CCDC88A-206ENST00000430086 LATS2Q9NRM7 1088 aa10.07□□□□□ -0.8
CCDC88A-206ENST00000430086 RNF225M0QZC1 329 aaPredicted RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms