RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 LARGE2Q8N3Y3 721 aa11.56□□□□□ -0.56
SMC1A-203ENST00000428014 SMC1BQ8NDV3 1235 aa11.56□□□□□ -0.56
SMC1A-203ENST00000428014 API5Q9BZZ5 524 aaKnown RBP11.56□□□□□ -0.56
SMC1A-203ENST00000428014 ZNF277Q9NRM2 450 aaPredicted RBP11.56□□□□□ -0.56
SMC1A-203ENST00000428014 POTECB2RU33 542 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 IPO8O15397 1037 aaKnown RBP11.55□□□□□ -0.56
SMC1A-203ENST00000428014 PPIP5K2O43314 1243 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 ATP2B4P23634 1241 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 RPS12P25398 132 aaKnown RBP11.55□□□□□ -0.56
SMC1A-203ENST00000428014 CCT4P50991 539 aaKnown RBP11.55□□□□□ -0.56
SMC1A-203ENST00000428014 TNIP1Q15025 636 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 CHRDL2Q6WN34 429 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 C16orf71Q8IYS4 520 aaPredicted RBP11.55□□□□□ -0.56
SMC1A-203ENST00000428014 DPF2Q92785 391 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 CDCA7LQ96GN5 454 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 ANKRD2Q9GZV1 360 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 NMRK2Q9NPI5 230 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 CREBZFQ9NS37 354 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 LEMD3Q9Y2U8 911 aa11.55□□□□□ -0.56
SMC1A-203ENST00000428014 HSPA6P17066 643 aa11.54□□□□□ -0.56
SMC1A-203ENST00000428014 IGHMBP2P38935 993 aaKnown RBP11.54□□□□□ -0.56
SMC1A-203ENST00000428014 RARSP54136 660 aaKnown RBP11.54□□□□□ -0.56
SMC1A-203ENST00000428014 WASHC4Q2M389 1173 aa11.54□□□□□ -0.56
SMC1A-203ENST00000428014 PODNQ7Z5L7 613 aa11.54□□□□□ -0.56
SMC1A-203ENST00000428014 C9orf78Q9NZ63 289 aaPredicted RBP11.54□□□□□ -0.56
SMC1A-203ENST00000428014 MED23Q9ULK4 1368 aa11.54□□□□□ -0.56
SMC1A-203ENST00000428014 TCERG1O14776 1098 aaKnown RBP11.53□□□□□ -0.56
SMC1A-203ENST00000428014 ITGA6P23229 1130 aa11.53□□□□□ -0.56
SMC1A-203ENST00000428014 FOXO4P98177 505 aa11.53□□□□□ -0.56
SMC1A-203ENST00000428014 OLFM4Q6UX06 510 aa11.53□□□□□ -0.56
SMC1A-203ENST00000428014 USP50Q70EL3 339 aaPredicted RBP11.53□□□□□ -0.56
SMC1A-203ENST00000428014 LDHDQ86WU2 507 aa11.53□□□□□ -0.56
SMC1A-203ENST00000428014 TBC1D16Q8TBP0 767 aa11.53□□□□□ -0.56
SMC1A-203ENST00000428014 GREM2Q9H772 168 aa11.53□□□□□ -0.56
SMC1A-203ENST00000428014 RRAGCQ9HB90 399 aa11.53□□□□□ -0.56
SMC1A-203ENST00000428014 SMC4Q9NTJ3 1288 aa11.53□□□□□ -0.56
SMC1A-203ENST00000428014 HACL1Q9UJ83 578 aa11.53□□□□□ -0.56
SMC1A-203ENST00000428014 GGA1Q9UJY5 639 aa11.53□□□□□ -0.56
SMC1A-203ENST00000428014 NSFL1CQ9UNZ2 370 aaKnown RBP11.53□□□□□ -0.56
SMC1A-203ENST00000428014 ADAMTSL1Q8N6G6 1762 aa11.52□□□□□ -0.57
SMC1A-203ENST00000428014 ANKRD18BA2A2Z9 1011 aa11.52□□□□□ -0.57
SMC1A-203ENST00000428014 F6X3S4 739 aa11.52□□□□□ -0.57
SMC1A-203ENST00000428014 DDNO94850 711 aaPredicted RBP11.52□□□□□ -0.57
SMC1A-203ENST00000428014 APLP1P51693 650 aa11.52□□□□□ -0.57
SMC1A-203ENST00000428014 IFIT5Q13325 482 aaKnown RBP11.52□□□□□ -0.57
SMC1A-203ENST00000428014 INTS3Q68E01 1043 aaKnown RBP11.52□□□□□ -0.57
SMC1A-203ENST00000428014 ZC3H15Q8WU90 426 aaKnown RBP11.52□□□□□ -0.57
SMC1A-203ENST00000428014 ZC3H12CQ9C0D7 883 aaKnown RBP11.52□□□□□ -0.57
SMC1A-203ENST00000428014 TAF1DQ9H5J8 278 aaPredicted RBP11.52□□□□□ -0.57
SMC1A-203ENST00000428014 SEC31BQ9NQW1 1179 aa11.52□□□□□ -0.57
SMC1A-203ENST00000428014 POLLQ9UGP5 575 aa11.52□□□□□ -0.57
SMC1A-203ENST00000428014 MINPP1Q9UNW1 487 aa11.52□□□□□ -0.57
SMC1A-203ENST00000428014 COL4A5P29400 1685 aa11.52□□□□□ -0.57
SMC1A-203ENST00000428014 TAF1P21675 1872 aa11.51□□□□□ -0.57
SMC1A-203ENST00000428014 GPSM2P81274 684 aa11.51□□□□□ -0.57
SMC1A-203ENST00000428014 AOC3Q16853 763 aa11.51□□□□□ -0.57
SMC1A-203ENST00000428014 CCDC57Q2TAC2 916 aa11.51□□□□□ -0.57
SMC1A-203ENST00000428014 RTL5Q5HYW3 569 aaPredicted RBP11.51□□□□□ -0.57
SMC1A-203ENST00000428014 CIAPIN1Q6FI81 312 aa11.51□□□□□ -0.57
SMC1A-203ENST00000428014 MPHOSPH8Q99549 860 aa11.51□□□□□ -0.57
SMC1A-203ENST00000428014 USP44Q9H0E7 712 aa11.51□□□□□ -0.57
SMC1A-203ENST00000428014 RTN4Q9NQC3 1192 aaKnown RBP11.51□□□□□ -0.57
SMC1A-203ENST00000428014 PGAP2Q9UHJ9 254 aa11.51□□□□□ -0.57
SMC1A-203ENST00000428014 ZNF541Q9H0D2 1346 aa11.51□□□□□ -0.57
SMC1A-203ENST00000428014 PSME4Q14997 1843 aa11.51□□□□□ -0.57
SMC1A-203ENST00000428014 VIL1P09327 827 aaKnown RBP11.5□□□□□ -0.57
SMC1A-203ENST00000428014 LMOD1P29536 600 aaPredicted RBP11.5□□□□□ -0.57
SMC1A-203ENST00000428014 SCNN1DP51172 638 aa11.5□□□□□ -0.57
SMC1A-203ENST00000428014 HNRNPUQ00839 825 aaKnown RBP eCLIP11.5□□□□□ -0.57
SMC1A-203ENST00000428014 CXCL9Q07325 125 aa11.5□□□□□ -0.57
SMC1A-203ENST00000428014 CHADLQ6NUI6 762 aa11.5□□□□□ -0.57
SMC1A-203ENST00000428014 AGBL3Q8NEM8 1001 aa11.5□□□□□ -0.57
SMC1A-203ENST00000428014 ZNF526Q8TF50 670 aaPredicted RBP11.5□□□□□ -0.57
SMC1A-203ENST00000428014 COA1Q9GZY4 146 aa11.5□□□□□ -0.57
SMC1A-203ENST00000428014 GPRC5DQ9NZD1 345 aa11.5□□□□□ -0.57
SMC1A-203ENST00000428014 ANKIB1Q9P2G1 1089 aa11.5□□□□□ -0.57
SMC1A-203ENST00000428014 MYO3BQ8WXR4 1341 aa11.5□□□□□ -0.57
SMC1A-203ENST00000428014 SENP3-EIF4A1A0A087X0R7 540 aa11.49□□□□□ -0.57
SMC1A-203ENST00000428014 EPHX2P34913 555 aa11.49□□□□□ -0.57
SMC1A-203ENST00000428014 FAM161AQ3B820 660 aa11.49□□□□□ -0.57
SMC1A-203ENST00000428014 SLC4A10Q6U841 1118 aa11.49□□□□□ -0.57
SMC1A-203ENST00000428014 LMBR1LQ6UX01 489 aa11.49□□□□□ -0.57
SMC1A-203ENST00000428014 KAZALD1Q96I82 304 aa11.49□□□□□ -0.57
SMC1A-203ENST00000428014 ADARB2Q9NS39 739 aaKnown RBP11.49□□□□□ -0.57
SMC1A-203ENST00000428014 C6orf229H3BNL8 230 aa11.48□□□□□ -0.57
SMC1A-203ENST00000428014 UFL1O94874 794 aa11.48□□□□□ -0.57
SMC1A-203ENST00000428014 GNAI3P08754 354 aa11.48□□□□□ -0.57
SMC1A-203ENST00000428014 NBPF7P0C2Y1 421 aaPredicted RBP11.48□□□□□ -0.57
SMC1A-203ENST00000428014 FKBP1AP62942 108 aaKnown RBP11.48□□□□□ -0.57
SMC1A-203ENST00000428014 MTX1Q13505 466 aa11.48□□□□□ -0.57
SMC1A-203ENST00000428014 UBE4AQ14139 1066 aa11.48□□□□□ -0.57
SMC1A-203ENST00000428014 ATF7IPQ6VMQ6 1270 aa11.48□□□□□ -0.57
SMC1A-203ENST00000428014 ZBTB47Q9UFB7 747 aaPredicted RBP11.48□□□□□ -0.57
SMC1A-203ENST00000428014 NOB1Q9ULX3 412 aaKnown RBP11.48□□□□□ -0.57
SMC1A-203ENST00000428014 MROH5Q6ZUA9 1318 aa11.48□□□□□ -0.57
SMC1A-203ENST00000428014 COL4A1P02462 1669 aa11.48□□□□□ -0.57
SMC1A-203ENST00000428014 ZNF804BA4D1E1 1349 aa11.47□□□□□ -0.57
SMC1A-203ENST00000428014 PASKQ96RG2 1323 aa11.47□□□□□ -0.57
SMC1A-203ENST00000428014 IRS2Q9Y4H2 1338 aa11.47□□□□□ -0.57
SMC1A-203ENST00000428014 YDJCA8MPS7 323 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms