RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 USP50Q70EL3 339 aaPredicted RBP23.43■■□□□ 1.34
GPC1-205ENST00000427506 BEND3Q5T5X7 828 aa23.42■■□□□ 1.34
GPC1-205ENST00000427506 CNTROBQ8N137 903 aa23.42■■□□□ 1.34
GPC1-205ENST00000427506 ADARB2Q9NS39 739 aaKnown RBP23.42■■□□□ 1.34
GPC1-205ENST00000427506 LTBP1Q14766 1721 aa23.42■■□□□ 1.34
GPC1-205ENST00000427506 XDHP47989 1333 aa23.41■■□□□ 1.34
GPC1-205ENST00000427506 ECE2O60344 883 aa23.41■■□□□ 1.34
GPC1-205ENST00000427506 ITGBL1O95965 494 aaPredicted RBP23.41■■□□□ 1.34
GPC1-205ENST00000427506 SLC4A10Q6U841 1118 aa23.41■■□□□ 1.34
GPC1-205ENST00000427506 PLA2G12BQ9BX93 195 aa23.41■■□□□ 1.34
GPC1-205ENST00000427506 CREBZFQ9NS37 354 aa23.41■■□□□ 1.34
GPC1-205ENST00000427506 RTL9Q8NET4 1388 aa23.4■■□□□ 1.34
GPC1-205ENST00000427506 PASKQ96RG2 1323 aa23.4■■□□□ 1.34
GPC1-205ENST00000427506 IGHMBP2P38935 993 aaKnown RBP23.4■■□□□ 1.34
GPC1-205ENST00000427506 CASP7P55210 303 aa23.4■■□□□ 1.34
GPC1-205ENST00000427506 BSDC1Q9NW68 430 aaPredicted RBP23.4■■□□□ 1.34
GPC1-205ENST00000427506 ADAMTSL1Q8N6G6 1762 aa23.4■■□□□ 1.34
GPC1-205ENST00000427506 ITGA6P23229 1130 aa23.39■■□□□ 1.33
GPC1-205ENST00000427506 ATP2B4P23634 1241 aa23.39■■□□□ 1.33
GPC1-205ENST00000427506 SLFN5Q08AF3 891 aa23.39■■□□□ 1.33
GPC1-205ENST00000427506 PSMD14O00487 310 aa23.38■■□□□ 1.33
GPC1-205ENST00000427506 FAM161AQ3B820 660 aa23.38■■□□□ 1.33
GPC1-205ENST00000427506 CNOT7Q9UIV1 285 aaKnown RBP23.38■■□□□ 1.33
GPC1-205ENST00000427506 MINPP1Q9UNW1 487 aa23.38■■□□□ 1.33
GPC1-205ENST00000427506 ZBTB12Q9Y330 459 aaPredicted RBP23.38■■□□□ 1.33
GPC1-205ENST00000427506 MYH3P11055 1940 aa23.37■■□□□ 1.33
GPC1-205ENST00000427506 H7C1D1 291 aa23.37■■□□□ 1.33
GPC1-205ENST00000427506 CSF1RP07333 972 aa23.37■■□□□ 1.33
GPC1-205ENST00000427506 MPHOSPH8Q99549 860 aa23.37■■□□□ 1.33
GPC1-205ENST00000427506 C9orf78Q9NZ63 289 aaPredicted RBP23.37■■□□□ 1.33
GPC1-205ENST00000427506 CHMP3Q9Y3E7 222 aa23.37■■□□□ 1.33
GPC1-205ENST00000427506 TMEM88BA6NKF7 163 aa23.36■■□□□ 1.33
GPC1-205ENST00000427506 JMYQ8N9B5 988 aa23.36■■□□□ 1.33
GPC1-205ENST00000427506 CDCA7LQ96GN5 454 aa23.36■■□□□ 1.33
GPC1-205ENST00000427506 SRCIN1Q9C0H9 1055 aa23.36■■□□□ 1.33
GPC1-205ENST00000427506 KCNQ5Q9NR82 932 aa23.36■■□□□ 1.33
GPC1-205ENST00000427506 ANKRD18BA2A2Z9 1011 aa23.35■■□□□ 1.33
GPC1-205ENST00000427506 GRM8O00222 908 aa23.35■■□□□ 1.33
GPC1-205ENST00000427506 ALDH1L1O75891 902 aa23.35■■□□□ 1.33
GPC1-205ENST00000427506 MICALL2Q8IY33 904 aa23.35■■□□□ 1.33
GPC1-205ENST00000427506 MRPL50Q8N5N7 158 aaKnown RBP23.35■■□□□ 1.33
GPC1-205ENST00000427506 MKRN1Q9UHC7 482 aaKnown RBP23.35■■□□□ 1.33
GPC1-205ENST00000427506 DPF2Q92785 391 aa23.34■■□□□ 1.33
GPC1-205ENST00000427506 RPS12P25398 132 aaKnown RBP23.33■■□□□ 1.33
GPC1-205ENST00000427506 CCT4P50991 539 aaKnown RBP23.33■■□□□ 1.33
GPC1-205ENST00000427506 FOXO4P98177 505 aa23.33■■□□□ 1.33
GPC1-205ENST00000427506 IFIT5Q13325 482 aaKnown RBP23.33■■□□□ 1.33
GPC1-205ENST00000427506 SSH1Q8WYL5 1049 aa23.33■■□□□ 1.33
GPC1-205ENST00000427506 SPEF2Q9C093 1822 aa23.32■■□□□ 1.32
GPC1-205ENST00000427506 SHTN1A0MZ66 631 aa23.32■■□□□ 1.32
GPC1-205ENST00000427506 ANKRD2Q9GZV1 360 aa23.32■■□□□ 1.32
GPC1-205ENST00000427506 WTIPA6NIX2 430 aaPredicted RBP23.31■■□□□ 1.32
GPC1-205ENST00000427506 LMBR1LQ6UX01 489 aa23.31■■□□□ 1.32
GPC1-205ENST00000427506 TRPM4Q8TD43 1214 aa23.31■■□□□ 1.32
GPC1-205ENST00000427506 LEMD3Q9Y2U8 911 aa23.31■■□□□ 1.32
GPC1-205ENST00000427506 PTPRCP08575 1304 aa23.31■■□□□ 1.32
GPC1-205ENST00000427506 VIL1P09327 827 aaKnown RBP23.3■■□□□ 1.32
GPC1-205ENST00000427506 HIRAP54198 1017 aaPredicted RBP23.3■■□□□ 1.32
GPC1-205ENST00000427506 MED23Q9ULK4 1368 aa23.29■■□□□ 1.32
GPC1-205ENST00000427506 TRAF5O00463 557 aa23.29■■□□□ 1.32
GPC1-205ENST00000427506 KCNJ4P48050 445 aa23.29■■□□□ 1.32
GPC1-205ENST00000427506 FMR1Q06787 632 aaKnown RBP eCLIP23.29■■□□□ 1.32
GPC1-205ENST00000427506 CCDC57Q2TAC2 916 aa23.29■■□□□ 1.32
GPC1-205ENST00000427506 TBC1D10BQ4KMP7 808 aaPredicted RBP23.29■■□□□ 1.32
GPC1-205ENST00000427506 TAF7LQ5H9L4 462 aa23.29■■□□□ 1.32
GPC1-205ENST00000427506 EPHA10Q5JZY3 1008 aa23.29■■□□□ 1.32
GPC1-205ENST00000427506 RBM26Q5T8P6 1007 aaKnown RBP23.29■■□□□ 1.32
GPC1-205ENST00000427506 SAMD7Q7Z3H4 446 aa23.29■■□□□ 1.32
GPC1-205ENST00000427506 PODNQ7Z5L7 613 aa23.29■■□□□ 1.32
GPC1-205ENST00000427506 ZC3H15Q8WU90 426 aaKnown RBP23.29■■□□□ 1.32
GPC1-205ENST00000427506 ABT1Q9ULW3 272 aaKnown RBP23.29■■□□□ 1.32
GPC1-205ENST00000427506 CHRNDQ07001 517 aa23.28■■□□□ 1.32
GPC1-205ENST00000427506 ALDH1L2Q3SY69 923 aa23.28■■□□□ 1.32
GPC1-205ENST00000427506 DIEXFQ68CQ4 756 aaKnown RBP23.28■■□□□ 1.32
GPC1-205ENST00000427506 TRMT2AQ8IZ69 625 aaKnown RBP23.28■■□□□ 1.32
GPC1-205ENST00000427506 SMC4Q9NTJ3 1288 aa23.28■■□□□ 1.32
GPC1-205ENST00000427506 ZNF804BA4D1E1 1349 aa23.28■■□□□ 1.32
GPC1-205ENST00000427506 CNTNAP1P78357 1384 aa23.27■■□□□ 1.32
GPC1-205ENST00000427506 USP17L3A6NCW0 530 aa23.27■■□□□ 1.32
GPC1-205ENST00000427506 USP17L4A6NCW7 530 aa23.27■■□□□ 1.32
GPC1-205ENST00000427506 RSBN1LQ6PCB5 846 aaPredicted RBP23.27■■□□□ 1.32
GPC1-205ENST00000427506 USP17L1Q7RTZ2 530 aa23.27■■□□□ 1.32
GPC1-205ENST00000427506 GLIS2Q9BZE0 524 aaPredicted RBP23.27■■□□□ 1.32
GPC1-205ENST00000427506 PGAP2Q9UHJ9 254 aa23.27■■□□□ 1.32
GPC1-205ENST00000427506 FBXW7Q969H0 707 aa23.26■■□□□ 1.31
GPC1-205ENST00000427506 COA1Q9GZY4 146 aa23.26■■□□□ 1.31
GPC1-205ENST00000427506 NBPF7P0C2Y1 421 aaPredicted RBP23.25■■□□□ 1.31
GPC1-205ENST00000427506 DEFB115Q30KQ5 88 aa23.25■■□□□ 1.31
GPC1-205ENST00000427506 CDC37L1Q7L3B6 337 aa23.25■■□□□ 1.31
GPC1-205ENST00000427506 AGBL3Q8NEM8 1001 aa23.25■■□□□ 1.31
GPC1-205ENST00000427506 SUCLG2Q96I99 432 aa23.25■■□□□ 1.31
GPC1-205ENST00000427506 CT47B1P0C2W7 299 aaPredicted RBP23.24■■□□□ 1.31
GPC1-205ENST00000427506 KIF4BQ2VIQ3 1234 aa23.24■■□□□ 1.31
GPC1-205ENST00000427506 LDHAL6AQ6ZMR3 332 aa23.24■■□□□ 1.31
GPC1-205ENST00000427506 TXNRD3Q86VQ6 643 aa23.24■■□□□ 1.31
GPC1-205ENST00000427506 MIER1Q8N108 512 aa23.24■■□□□ 1.31
GPC1-205ENST00000427506 HELBQ8NG08 1087 aaPredicted RBP23.24■■□□□ 1.31
GPC1-205ENST00000427506 ZNF594Q96JF6 807 aaPredicted RBP23.24■■□□□ 1.31
GPC1-205ENST00000427506 CNNM1Q9NRU3 951 aa23.24■■□□□ 1.31
GPC1-205ENST00000427506 SCN9AQ15858 1988 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms