RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 PGAP2Q9UHJ9 254 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 CNOT7Q9UIV1 285 aaKnown RBP14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 GGA1Q9UJY5 639 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 FANCIQ9NVI1 1328 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 CACNA1FO60840 1977 aa14.82□□□□□ -0.04
SQSTM1-203ENST00000422245 CDC5LQ99459 802 aaKnown RBP14.81□□□□□ -0.04
SQSTM1-203ENST00000422245 ZC3H12CQ9C0D7 883 aaKnown RBP14.81□□□□□ -0.04
SQSTM1-203ENST00000422245 RTL9Q8NET4 1388 aa14.81□□□□□ -0.04
SQSTM1-203ENST00000422245 NEURL1BA8MQ27 555 aa14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 FOXN1O15353 648 aa14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 SLC4A2P04920 1241 aa14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 ECE1P42892 770 aa14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 CTCFP49711 727 aaPredicted RBP14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 FMR1Q06787 632 aaKnown RBP eCLIP14.8□□□□□ -0.042e-7■□□□□ 9.8
SQSTM1-203ENST00000422245 JARID2Q92833 1246 aaPredicted RBP14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 GPR101Q96P66 508 aaPredicted RBP14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 CCDC85AQ96PX6 553 aaPredicted RBP14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 WBP1LQ9NX94 342 aa14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 ZBTB12Q9Y330 459 aaPredicted RBP14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 TLL2Q9Y6L7 1015 aa14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 XDHP47989 1333 aa14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 WDR33Q9C0J8 1336 aaKnown RBP14.8□□□□□ -0.04
SQSTM1-203ENST00000422245 ZNF609O15014 1411 aa14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 CELF2O95319 508 aaKnown RBP14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 HIRAP54198 1017 aaPredicted RBP14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 MAP2K1Q02750 393 aaPredicted RBP14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 FLIIQ13045 1269 aa14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 PSME4Q14997 1843 aa14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 DOK7Q18PE1 504 aa14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 CST9Q5W186 159 aa14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 PAXIP1Q6ZW49 1069 aaPredicted RBP14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 CDC37L1Q7L3B6 337 aa14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 WDR63Q8IWG1 891 aa14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 CAPNS2Q96L46 248 aa14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 GLIS2Q9BZE0 524 aaPredicted RBP14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 PRDM10Q9NQV6 1147 aa14.79□□□□□ -0.04
SQSTM1-203ENST00000422245 SCN9AQ15858 1988 aa14.78□□□□□ -0.04
SQSTM1-203ENST00000422245 SHTN1A0MZ66 631 aa14.78□□□□□ -0.04
SQSTM1-203ENST00000422245 G3V3G9 751 aa14.78□□□□□ -0.04
SQSTM1-203ENST00000422245 CWF19L2Q2TBE0 894 aaKnown RBP14.78□□□□□ -0.04
SQSTM1-203ENST00000422245 DCAF8Q5TAQ9 597 aa14.78□□□□□ -0.04
SQSTM1-203ENST00000422245 G2E3Q7L622 706 aa14.78□□□□□ -0.04
SQSTM1-203ENST00000422245 TTLL11Q8NHH1 800 aa14.78□□□□□ -0.04
SQSTM1-203ENST00000422245 ATP2B4P23634 1241 aa14.77□□□□□ -0.05
SQSTM1-203ENST00000422245 FKBP5Q13451 457 aaPredicted RBP14.77□□□□□ -0.05
SQSTM1-203ENST00000422245 UBE3BQ7Z3V4 1068 aa14.77□□□□□ -0.05
SQSTM1-203ENST00000422245 HHIPL1Q96JK4 782 aa14.77□□□□□ -0.05
SQSTM1-203ENST00000422245 MYH16Q9H6N6 1097 aa14.77□□□□□ -0.05
SQSTM1-203ENST00000422245 GREM2Q9H772 168 aa14.77□□□□□ -0.05
SQSTM1-203ENST00000422245 BSDC1Q9NW68 430 aaPredicted RBP14.77□□□□□ -0.05
SQSTM1-203ENST00000422245 SPEF2Q9C093 1822 aa14.77□□□□□ -0.05
SQSTM1-203ENST00000422245 MED23Q9ULK4 1368 aa14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 H7C1W4 665 aa14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 VIL1P09327 827 aaKnown RBP14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 GCKRQ14397 625 aa14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 TBC1D10BQ4KMP7 808 aaPredicted RBP14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 CYP4F22Q6NT55 531 aa14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 SAMD7Q7Z3H4 446 aa14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 SAPCD2Q86UD0 394 aa14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 DNAAF4Q8WXU2 420 aa14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 PLA2G12BQ9BX93 195 aa14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 KCNQ5Q9NR82 932 aa14.76□□□□□ -0.05
SQSTM1-203ENST00000422245 KIF4BQ2VIQ3 1234 aa14.75□□□□□ -0.05
SQSTM1-203ENST00000422245 KRT26Q7Z3Y9 468 aa14.75□□□□□ -0.05
SQSTM1-203ENST00000422245 AGBL3Q8NEM8 1001 aa14.75□□□□□ -0.05
SQSTM1-203ENST00000422245 LINS1Q8NG48 757 aa14.75□□□□□ -0.05
SQSTM1-203ENST00000422245 ZNF408Q9H9D4 720 aa14.75□□□□□ -0.05
SQSTM1-203ENST00000422245 VAMP4O75379 141 aa14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 EGFRP00533 1210 aa14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 MAP2K2P36507 400 aa14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 IGHMBP2P38935 993 aaKnown RBP14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 EXOSC9Q06265 439 aaKnown RBP14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 GRM1Q13255 1194 aa14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 RSBN1LQ6PCB5 846 aaPredicted RBP14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 PODNQ7Z5L7 613 aa14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 USP48Q86UV5 1035 aa14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 BEGAINQ9BUH8 593 aa14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 MINPP1Q9UNW1 487 aa14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 SALL2Q9Y467 1007 aaPredicted RBP14.74□□□□□ -0.05
SQSTM1-203ENST00000422245 HSPA8P11142 646 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-203ENST00000422245 CASP7P55210 303 aa14.73□□□□□ -0.05
SQSTM1-203ENST00000422245 ZNF280AP59817 542 aaPredicted RBP14.73□□□□□ -0.05
SQSTM1-203ENST00000422245 DCPSQ96C86 337 aaKnown RBP14.73□□□□□ -0.05
SQSTM1-203ENST00000422245 USP17L3A6NCW0 530 aa14.72□□□□□ -0.05
SQSTM1-203ENST00000422245 USP17L4A6NCW7 530 aa14.72□□□□□ -0.05
SQSTM1-203ENST00000422245 CAPN15O75808 1086 aa14.72□□□□□ -0.05
SQSTM1-203ENST00000422245 ITGA6P23229 1130 aa14.72□□□□□ -0.05
SQSTM1-203ENST00000422245 CCT4P50991 539 aaKnown RBP14.72□□□□□ -0.05
SQSTM1-203ENST00000422245 LBX1P52954 281 aa14.72□□□□□ -0.05
SQSTM1-203ENST00000422245 FAM161AQ3B820 660 aa14.72□□□□□ -0.05
SQSTM1-203ENST00000422245 RBM26Q5T8P6 1007 aaKnown RBP14.72□□□□□ -0.05
SQSTM1-203ENST00000422245 USP17L1Q7RTZ2 530 aa14.72□□□□□ -0.05
SQSTM1-203ENST00000422245 GGA3Q9NZ52 723 aa14.72□□□□□ -0.05
SQSTM1-203ENST00000422245 POLR2AP24928 1970 aaKnown RBP14.71□□□□□ -0.05
SQSTM1-203ENST00000422245 ADM5C9JUS6 153 aa14.71□□□□□ -0.05
SQSTM1-203ENST00000422245 SULF1Q8IWU6 871 aa14.71□□□□□ -0.05
SQSTM1-203ENST00000422245 FAM9BQ8IZU0 186 aa14.71□□□□□ -0.05
SQSTM1-203ENST00000422245 GMLQ99445 158 aa14.71□□□□□ -0.05
SQSTM1-203ENST00000422245 MPHOSPH8Q99549 860 aa14.71□□□□□ -0.05
SQSTM1-203ENST00000422245 ANKRD2Q9GZV1 360 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms