RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-208	ENST00000417285	VEGFB	P49765	207 aa		32.38	■■■□□ 2.77
VEGFA-208	ENST00000417285	CWF19L2	Q2TBE0	894 aa	Known RBP	32.38	■■■□□ 2.77
VEGFA-208	ENST00000417285	TTLL11	Q8NHH1	800 aa		32.38	■■■□□ 2.77
VEGFA-208	ENST00000417285	CCDC85A	Q96PX6	553 aa	Predicted RBP	32.38	■■■□□ 2.77
VEGFA-208	ENST00000417285	PSMD14	O00487	310 aa		32.37	■■■□□ 2.77
VEGFA-208	ENST00000417285	ECE2	O60344	883 aa		32.37	■■■□□ 2.77
VEGFA-208	ENST00000417285	RPS12	P25398	132 aa	Known RBP	32.37	■■■□□ 2.77
VEGFA-208	ENST00000417285	EXOSC9	Q06265	439 aa	Known RBP	32.37	■■■□□ 2.77
VEGFA-208	ENST00000417285		G3V3G9	751 aa		32.36	■■■□□ 2.77
VEGFA-208	ENST00000417285	UFL1	O94874	794 aa		32.36	■■■□□ 2.77
VEGFA-208	ENST00000417285	FKBP5	Q13451	457 aa	Predicted RBP	32.36	■■■□□ 2.77
VEGFA-208	ENST00000417285	DOK7	Q18PE1	504 aa		32.36	■■■□□ 2.77
VEGFA-208	ENST00000417285	DCAF8	Q5TAQ9	597 aa		32.36	■■■□□ 2.77
VEGFA-208	ENST00000417285	COL13A1	Q5TAT6	717 aa	Predicted RBP	32.36	■■■□□ 2.77
VEGFA-208	ENST00000417285	MYH16	Q9H6N6	1097 aa		32.36	■■■□□ 2.77
VEGFA-208	ENST00000417285	ABT1	Q9ULW3	272 aa	Known RBP	32.36	■■■□□ 2.77
VEGFA-208	ENST00000417285	DNAAF4	Q8WXU2	420 aa		32.35	■■■□□ 2.77
VEGFA-208	ENST00000417285	XDH	P47989	1333 aa		32.34	■■■□□ 2.77
VEGFA-208	ENST00000417285	GCKR	Q14397	625 aa		32.34	■■■□□ 2.77
VEGFA-208	ENST00000417285	BSDC1	Q9NW68	430 aa	Predicted RBP	32.34	■■■□□ 2.77
VEGFA-208	ENST00000417285	HIRA	P54198	1017 aa	Predicted RBP	32.33	■■■□□ 2.77
VEGFA-208	ENST00000417285	UBE3B	Q7Z3V4	1068 aa		32.33	■■■□□ 2.77
VEGFA-208	ENST00000417285	MICALL2	Q8IY33	904 aa		32.33	■■■□□ 2.77
VEGFA-208	ENST00000417285	LINS1	Q8NG48	757 aa		32.33	■■■□□ 2.77
VEGFA-208	ENST00000417285	ZBTB12	Q9Y330	459 aa	Predicted RBP	32.33	■■■□□ 2.77
VEGFA-208	ENST00000417285	ATP2B4	P23634	1241 aa		32.32	■■■□□ 2.76
VEGFA-208	ENST00000417285	RTL9	Q8NET4	1388 aa		32.32	■■■□□ 2.76
VEGFA-208	ENST00000417285	COL4A1	P02462	1669 aa		32.31	■■■□□ 2.76
VEGFA-208	ENST00000417285	TRAF5	O00463	557 aa		32.31	■■■□□ 2.76
VEGFA-208	ENST00000417285	CST9	Q5W186	159 aa		32.31	■■■□□ 2.76
VEGFA-208	ENST00000417285	CDC37L1	Q7L3B6	337 aa		32.31	■■■□□ 2.76
VEGFA-208	ENST00000417285	GPR101	Q96P66	508 aa	Predicted RBP	32.31	■■■□□ 2.76
VEGFA-208	ENST00000417285	PLA2G12B	Q9BX93	195 aa		32.31	■■■□□ 2.76
VEGFA-208	ENST00000417285	GREM2	Q9H772	168 aa		32.31	■■■□□ 2.76
VEGFA-208	ENST00000417285	KCNQ5	Q9NR82	932 aa		32.31	■■■□□ 2.76
VEGFA-208	ENST00000417285	VIL1	P09327	827 aa	Known RBP	32.3	■■■□□ 2.76
VEGFA-208	ENST00000417285	FMR1	Q06787	632 aa	Known RBP eCLIP	32.29	■■■□□ 2.76
VEGFA-208	ENST00000417285	TRPM4	Q8TD43	1214 aa		32.29	■■■□□ 2.76
VEGFA-208	ENST00000417285	SPINK5	Q9NQ38	1064 aa	Predicted RBP	32.28	■■■□□ 2.76
VEGFA-208	ENST00000417285	MINPP1	Q9UNW1	487 aa		32.28	■■■□□ 2.76
VEGFA-208	ENST00000417285	WDR33	Q9C0J8	1336 aa	Known RBP	32.27	■■■□□ 2.76
VEGFA-208	ENST00000417285	AIDA	Q96BJ3	306 aa		32.27	■■■□□ 2.76
VEGFA-208	ENST00000417285	GLIS2	Q9BZE0	524 aa	Predicted RBP	32.27	■■■□□ 2.76
VEGFA-208	ENST00000417285	SHTN1	A0MZ66	631 aa		32.26	■■■□□ 2.75
VEGFA-208	ENST00000417285	ECE1	P42892	770 aa		32.26	■■■□□ 2.75
VEGFA-208	ENST00000417285	PODN	Q7Z5L7	613 aa		32.26	■■■□□ 2.75
VEGFA-208	ENST00000417285	TLL2	Q9Y6L7	1015 aa		32.26	■■■□□ 2.75
VEGFA-208	ENST00000417285	CSF1R	P07333	972 aa		32.25	■■■□□ 2.75
VEGFA-208	ENST00000417285	IGHMBP2	P38935	993 aa	Known RBP	32.25	■■■□□ 2.75
VEGFA-208	ENST00000417285	CASP7	P55210	303 aa		32.25	■■■□□ 2.75
VEGFA-208	ENST00000417285	SAMD7	Q7Z3H4	446 aa		32.25	■■■□□ 2.75
VEGFA-208	ENST00000417285	WBP1L	Q9NX94	342 aa		32.25	■■■□□ 2.75
VEGFA-208	ENST00000417285	CELF2	O95319	508 aa	Known RBP	32.24	■■■□□ 2.75
VEGFA-208	ENST00000417285	MAP2K1	Q02750	393 aa	Predicted RBP	32.23	■■■□□ 2.75
VEGFA-208	ENST00000417285	TNS4	Q8IZW8	715 aa		32.23	■■■□□ 2.75
VEGFA-208	ENST00000417285	AGBL3	Q8NEM8	1001 aa		32.23	■■■□□ 2.75
VEGFA-208	ENST00000417285	CACNA1F	O60840	1977 aa		32.23	■■■□□ 2.75
VEGFA-208	ENST00000417285	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	32.22	■■■□□ 2.75
VEGFA-208	ENST00000417285	FOXN1	O15353	648 aa		32.21	■■■□□ 2.75
VEGFA-208	ENST00000417285	ITGA6	P23229	1130 aa		32.21	■■■□□ 2.75
VEGFA-208	ENST00000417285	CCT4	P50991	539 aa	Known RBP	32.21	■■■□□ 2.75
VEGFA-208	ENST00000417285	RBM26	Q5T8P6	1007 aa	Known RBP	32.21	■■■□□ 2.75
VEGFA-208	ENST00000417285	RSBN1L	Q6PCB5	846 aa	Predicted RBP	32.21	■■■□□ 2.75
VEGFA-208	ENST00000417285	CAPNS2	Q96L46	248 aa		32.21	■■■□□ 2.75
VEGFA-208	ENST00000417285	ANKRD2	Q9GZV1	360 aa		32.21	■■■□□ 2.75
VEGFA-208	ENST00000417285	LEMD3	Q9Y2U8	911 aa		32.21	■■■□□ 2.75
VEGFA-208	ENST00000417285	CTCF	P49711	727 aa	Predicted RBP	32.2	■■■□□ 2.75
VEGFA-208	ENST00000417285	BEND3	Q5T5X7	828 aa		32.2	■■■□□ 2.75
VEGFA-208	ENST00000417285	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	32.2	■■■□□ 2.75
VEGFA-208	ENST00000417285	SAPCD2	Q86UD0	394 aa		32.2	■■■□□ 2.75
VEGFA-208	ENST00000417285	USP48	Q86UV5	1035 aa		32.2	■■■□□ 2.75
VEGFA-208	ENST00000417285	DCPS	Q96C86	337 aa	Known RBP	32.2	■■■□□ 2.75
VEGFA-208	ENST00000417285	HHIPL1	Q96JK4	782 aa		32.2	■■■□□ 2.75
VEGFA-208	ENST00000417285	MPHOSPH8	Q99549	860 aa		32.2	■■■□□ 2.75
VEGFA-208	ENST00000417285	USP17L3	A6NCW0	530 aa		32.19	■■■□□ 2.74
VEGFA-208	ENST00000417285	USP17L4	A6NCW7	530 aa		32.19	■■■□□ 2.74
VEGFA-208	ENST00000417285	USP17L1	Q7RTZ2	530 aa		32.19	■■■□□ 2.74
VEGFA-208	ENST00000417285	KRT26	Q7Z3Y9	468 aa		32.18	■■■□□ 2.74
VEGFA-208	ENST00000417285	PRDM10	Q9NQV6	1147 aa		32.18	■■■□□ 2.74
VEGFA-208	ENST00000417285	ZNF521	Q96K83	1311 aa		32.18	■■■□□ 2.74
VEGFA-208	ENST00000417285	MED23	Q9ULK4	1368 aa		32.18	■■■□□ 2.74
VEGFA-208	ENST00000417285		F6X3S4	739 aa		32.17	■■■□□ 2.74
VEGFA-208	ENST00000417285	ZNF280A	P59817	542 aa	Predicted RBP	32.17	■■■□□ 2.74
VEGFA-208	ENST00000417285	KIF4B	Q2VIQ3	1234 aa		32.17	■■■□□ 2.74
VEGFA-208	ENST00000417285	ANKRD18B	A2A2Z9	1011 aa		32.16	■■■□□ 2.74
VEGFA-208	ENST00000417285	EGFR	P00533	1210 aa		32.16	■■■□□ 2.74
VEGFA-208	ENST00000417285	FAM161A	Q3B820	660 aa		32.16	■■■□□ 2.74
VEGFA-208	ENST00000417285	CYP4F22	Q6NT55	531 aa		32.16	■■■□□ 2.74
VEGFA-208	ENST00000417285	ZNF609	O15014	1411 aa		32.16	■■■□□ 2.74
VEGFA-208	ENST00000417285	TRPM7	Q96QT4	1865 aa		32.15	■■■□□ 2.74
VEGFA-208	ENST00000417285	MAP2K2	P36507	400 aa		32.15	■■■□□ 2.74
VEGFA-208	ENST00000417285	GML	Q99445	158 aa		32.15	■■■□□ 2.74
VEGFA-208	ENST00000417285	COA1	Q9GZY4	146 aa		32.15	■■■□□ 2.74
VEGFA-208	ENST00000417285	ZNF408	Q9H9D4	720 aa		32.15	■■■□□ 2.74
VEGFA-208	ENST00000417285	WTIP	A6NIX2	430 aa	Predicted RBP	32.14	■■■□□ 2.74
VEGFA-208	ENST00000417285	USP17L8	P0C7I0	530 aa		32.14	■■■□□ 2.74
VEGFA-208	ENST00000417285	ZNF804B	A4D1E1	1349 aa		32.13	■■■□□ 2.73
VEGFA-208	ENST00000417285	MYH3	P11055	1940 aa		32.13	■■■□□ 2.73
VEGFA-208	ENST00000417285	FOXO4	P98177	505 aa		32.13	■■■□□ 2.73
VEGFA-208	ENST00000417285	IFIT5	Q13325	482 aa	Known RBP	32.13	■■■□□ 2.73

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