RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 DACT1Q9NYF0 836 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.76□□□□□ -1.334e-7■■■■□ 24.4
CCDC88A-203ENST00000412148 MORC2Q9Y6X9 1032 aaPredicted RBP6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 ABCC12Q96J65 1359 aa6.76□□□□□ -1.33
CCDC88A-203ENST00000412148 A0A0D9SFI3 127 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 MAP4K4O95819 1239 aaPredicted RBP6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 ZNF165P49910 485 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 NCBP1Q09161 790 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 OS9Q13438 667 aaPredicted RBP6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 STX1AQ16623 288 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 CYB5RLQ6IPT4 315 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 LGR6Q9HBX8 967 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 PHF8Q9UPP1 1060 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 WDR19Q8NEZ3 1342 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 A0A1W2PQ27 194 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 A0A1W2PQ64 194 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 A0A1W2PQD8 194 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 MYO1BO43795 1136 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 PTGS1P23219 599 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 GSDMDP57764 484 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 PDIA6Q15084 440 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 ENGASEQ8NFI3 743 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 SUCLG2Q96I99 432 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 NEK1Q96PY6 1258 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 DSCC1Q9BVC3 393 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 CTNNA3Q9UI47 895 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 DDX41Q9UJV9 622 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 ZNF609O15014 1411 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 NUTM2FA1L443 756 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 RFX5P48382 616 aaPredicted RBP6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 MLECQ14165 292 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 PPP4R3BQ5MIZ7 849 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 NUTM2GQ5VZR2 741 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 CCDC186Q7Z3E2 898 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 ARHGEF25Q86VW2 580 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 LRRC8AQ8IWT6 810 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 FAM227BQ96M60 508 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 HAUS7Q99871 368 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 HELLSQ9NRZ9 838 aa6.75□□□□□ -1.33
CCDC88A-203ENST00000412148 GOLGA6L4A6NEF3 574 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 CPA1P15085 419 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 ZNF530Q6P9A1 599 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 LRP10Q7Z4F1 713 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 LUZP1Q86V48 1076 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 ZNF274Q96GC6 653 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 METTL22Q9BUU2 404 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 BICC1Q9H694 974 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 ANKRD36CQ5JPF3 1778 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 DOCK2Q92608 1830 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 MYH3P11055 1940 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 NEURL1BA8MQ27 555 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 EXOSC10Q01780 885 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 FAM160A1Q05DH4 1040 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 ATP2B3Q16720 1220 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 C1orf141Q5JVX7 400 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 NECAB1Q8N987 351 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 ZNF396Q96N95 335 aaPredicted RBP6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 SLC26A8Q96RN1 970 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 FSD1Q9BTV5 496 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 ANO10Q9NW15 660 aa6.74□□□□□ -1.33
CCDC88A-203ENST00000412148 KDM6AO15550 1401 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 PSDA5PKW4 1024 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 NR1I2O75469 434 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 IGKV5-2P06315 115 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 EIF2S2P20042 333 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 SNW1Q13573 536 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 GCKRQ14397 625 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 MCMDC2Q4G0Z9 681 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 ELOA2Q8IYF1 753 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 CACTINQ8WUQ7 758 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 TRIM5Q9C035 493 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 NAT10Q9H0A0 1025 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 L2HGDHQ9H9P8 463 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 ATG3Q9NT62 314 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 CLIP2Q9UDT6 1046 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 CARMIL3Q8ND23 1372 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 MAP3K15Q6ZN16 1313 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 SHANK3Q9BYB0 1731 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 KCNQ3O43525 872 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 TNNT1P13805 278 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 KCNJ4P48050 445 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 FOXD4L6Q3SYB3 417 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 FOXD4L3Q6VB84 417 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 DHX32Q7L7V1 743 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 NSUN7Q8NE18 718 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 CCDC112Q8NEF3 446 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 ERO1AQ96HE7 468 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 BCL11BQ9C0K0 894 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 AKAP11Q9UKA4 1901 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 TIAM2Q8IVF5 1701 aa6.73□□□□□ -1.33
CCDC88A-203ENST00000412148 KCNA6P17658 529 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 CCZ1BP86790 482 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 CCZ1P86791 482 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 NEXNQ0ZGT2 675 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 TNNI3KQ59H18 835 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 ADALQ6DHV7 355 aa6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 ZNF589Q86UQ0 364 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 C17orf53Q8N3J3 647 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-203ENST00000412148 KBTBD3Q8NAB2 608 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms