RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 WDR17Q8IZU2 1322 aa15.23■□□□□ 0.03
PTPRN-202ENST00000409251 SMC2O95347 1197 aa15.23■□□□□ 0.03
PTPRN-202ENST00000409251 CHGBP05060 677 aa15.23■□□□□ 0.03
PTPRN-202ENST00000409251 ERCC6LQ2NKX8 1250 aa15.23■□□□□ 0.03
PTPRN-202ENST00000409251 ZSCAN25Q6NSZ9 544 aa15.23■□□□□ 0.03
PTPRN-202ENST00000409251 DNAJC10Q8IXB1 793 aa15.23■□□□□ 0.03
PTPRN-202ENST00000409251 ZNF594Q96JF6 807 aaPredicted RBP15.23■□□□□ 0.03
PTPRN-202ENST00000409251 MED1Q15648 1581 aaPredicted RBP15.23■□□□□ 0.03
PTPRN-202ENST00000409251 NOL10Q9BSC4 688 aaKnown RBP15.23■□□□□ 0.03
PTPRN-202ENST00000409251 KDM6AO15550 1401 aaPredicted RBP15.23■□□□□ 0.03
PTPRN-202ENST00000409251 RGPD5Q99666 1765 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 CDC37L1Q7L3B6 337 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 ZSWIM4Q9H7M6 989 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 SMTNL1A8MU46 457 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 KMT5BQ4FZB7 885 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 HSP90AA4PQ58FG1 418 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 RUFY3Q7L099 469 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 TTC6Q86TZ1 520 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 CCDC34Q96HJ3 373 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 TBC1D2BQ9UPU7 963 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 BIN1O00499 593 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 FBXO38Q6PIJ6 1188 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 STK11IPQ8N1F8 1099 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 CLASRPQ8N2M8 674 aaKnown RBP15.22■□□□□ 0.03
PTPRN-202ENST00000409251 LRRC2Q9BYS8 371 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 SPTLC3Q9NUV7 552 aa15.22■□□□□ 0.03
PTPRN-202ENST00000409251 NBPF26B4DH59 902 aa15.21■□□□□ 0.03
PTPRN-202ENST00000409251 PDIA4P13667 645 aaKnown RBP15.21■□□□□ 0.03
PTPRN-202ENST00000409251 CCDC144BQ3MJ40 725 aa15.21■□□□□ 0.03
PTPRN-202ENST00000409251 NBPF14Q5TI25 921 aa15.21■□□□□ 0.03
PTPRN-202ENST00000409251 NBPF10Q6P3W6 841 aaKnown RBP15.21■□□□□ 0.03
PTPRN-202ENST00000409251 CCDC144CPQ8IYA2 1237 aa15.21■□□□□ 0.03
PTPRN-202ENST00000409251 NBPF15Q8N660 670 aa15.21■□□□□ 0.03
PTPRN-202ENST00000409251 ADCK5Q3MIX3 580 aa15.21■□□□□ 0.03
PTPRN-202ENST00000409251 C10orf67Q8IYJ2 551 aa15.21■□□□□ 0.03
PTPRN-202ENST00000409251 RGPD1P0DJD0 1748 aa15.21■□□□□ 0.03
PTPRN-202ENST00000409251 KIF18AQ8NI77 898 aa15.21■□□□□ 0.02
PTPRN-202ENST00000409251 CHMP4CQ96CF2 233 aa15.21■□□□□ 0.02
PTPRN-202ENST00000409251 DNAJC2Q99543 621 aaKnown RBP15.21■□□□□ 0.02
PTPRN-202ENST00000409251 SNX14Q9Y5W7 946 aa15.21■□□□□ 0.02
PTPRN-202ENST00000409251 STRCP1A6NGW2 1772 aa15.2■□□□□ 0.02
PTPRN-202ENST00000409251 LMBR1LQ6UX01 489 aa15.2■□□□□ 0.02
PTPRN-202ENST00000409251 LINS1Q8NG48 757 aa15.2■□□□□ 0.02
PTPRN-202ENST00000409251 C8orf37Q96NL8 207 aa15.2■□□□□ 0.02
PTPRN-202ENST00000409251 GYS2P54840 703 aa15.2■□□□□ 0.02
PTPRN-202ENST00000409251 CUL4AQ13619 759 aa15.2■□□□□ 0.02
PTPRN-202ENST00000409251 TERF2Q15554 542 aa15.2■□□□□ 0.02
PTPRN-202ENST00000409251 INTS4Q96HW7 963 aaKnown RBP15.2■□□□□ 0.02
PTPRN-202ENST00000409251 NEURL1BA8MQ27 555 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 RAB11FIP3O75154 756 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 TPM3P06753 285 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 SLFNL1Q499Z3 407 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 SYT10Q6XYQ8 523 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 FAM89AQ96GI7 184 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 EPC1Q9H2F5 836 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 ANKRD7Q92527 254 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 CYP46A1Q9Y6A2 500 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 MRVI1Q9Y6F6 885 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 SLFN14P0C7P3 912 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 MNS1Q8NEH6 495 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 SSH3Q8TE77 659 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 PIGBQ92521 554 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 KAZALD1Q96I82 304 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 ZCCHC17Q9NP64 241 aaKnown RBP15.19■□□□□ 0.02
PTPRN-202ENST00000409251 TOMM22Q9NS69 142 aa15.19■□□□□ 0.02
PTPRN-202ENST00000409251 SOS2Q07890 1332 aaPredicted RBP15.19■□□□□ 0.02
PTPRN-202ENST00000409251 NR1I2O75469 434 aa15.18■□□□□ 0.02
PTPRN-202ENST00000409251 ZKSCAN1P17029 563 aaPredicted RBP15.18■□□□□ 0.02
PTPRN-202ENST00000409251 GCKRQ14397 625 aa15.18■□□□□ 0.02
PTPRN-202ENST00000409251 KIF1BPQ96EK5 621 aa15.18■□□□□ 0.02
PTPRN-202ENST00000409251 ZNF142P52746 1687 aaPredicted RBP15.18■□□□□ 0.02
PTPRN-202ENST00000409251 DDX41Q9UJV9 622 aaKnown RBP15.18■□□□□ 0.02
PTPRN-202ENST00000409251 CCDC69A6NI79 296 aa15.18■□□□□ 0.02
PTPRN-202ENST00000409251 EXOC5O00471 708 aa15.18■□□□□ 0.02
PTPRN-202ENST00000409251 TAF3Q5VWG9 929 aa15.18■□□□□ 0.02
PTPRN-202ENST00000409251 UBAP1LF5GYI3 381 aa15.17■□□□□ 0.02
PTPRN-202ENST00000409251 ZNF75DP51815 510 aa15.17■□□□□ 0.02
PTPRN-202ENST00000409251 ARHGAP29Q52LW3 1261 aa15.17■□□□□ 0.02
PTPRN-202ENST00000409251 SDF4Q9BRK5 362 aa15.17■□□□□ 0.02
PTPRN-202ENST00000409251 PCDH11XQ9BZA7 1347 aa15.17■□□□□ 0.02
PTPRN-202ENST00000409251 PCDH11YQ9BZA8 1340 aa15.17■□□□□ 0.02
PTPRN-202ENST00000409251 TCHHQ07283 1943 aa15.17■□□□□ 0.02
PTPRN-202ENST00000409251 URI1O94763 535 aaPredicted RBP15.17■□□□□ 0.02
PTPRN-202ENST00000409251 EAF2Q96CJ1 260 aaPredicted RBP15.17■□□□□ 0.02
PTPRN-202ENST00000409251 FTOQ9C0B1 505 aaKnown RBP eCLIP15.17■□□□□ 0.02
PTPRN-202ENST00000409251 MARF1Q9Y4F3 1742 aaKnown RBP15.17■□□□□ 0.02
PTPRN-202ENST00000409251 SRCAPQ6ZRS2 3230 aa15.17■□□□□ 0.02
PTPRN-202ENST00000409251 ZNF397Q8NF99 534 aaPredicted RBP15.17■□□□□ 0.02
PTPRN-202ENST00000409251 MTMR6Q9Y217 621 aa15.17■□□□□ 0.02
PTPRN-202ENST00000409251 ANKRD65E5RJM6 399 aa15.16■□□□□ 0.02
PTPRN-202ENST00000409251 BABAM1Q9NWV8 329 aa15.16■□□□□ 0.02
PTPRN-202ENST00000409251 SEC31AO94979 1220 aaKnown RBP15.16■□□□□ 0.02
PTPRN-202ENST00000409251 HNRNPH2P55795 449 aaKnown RBP15.16■□□□□ 0.02
PTPRN-202ENST00000409251 TIMM10P62072 90 aa15.16■□□□□ 0.02
PTPRN-202ENST00000409251 CNTROBQ8N137 903 aa15.16■□□□□ 0.02
PTPRN-202ENST00000409251 CAMTA1Q9Y6Y1 1673 aa15.16■□□□□ 0.02
PTPRN-202ENST00000409251 METTL22Q9BUU2 404 aaPredicted RBP15.16■□□□□ 0.02
PTPRN-202ENST00000409251 SNRKQ9NRH2 765 aa15.16■□□□□ 0.02
PTPRN-202ENST00000409251 CALCOCO1Q9P1Z2 691 aa15.16■□□□□ 0.02
PTPRN-202ENST00000409251 EP400Q96L91 3159 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms