RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 SLIT2O94813 1529 aa11.73□□□□□ -0.53
MSH2-202ENST00000406134 RRP9O43818 475 aaKnown RBP11.73□□□□□ -0.53
MSH2-202ENST00000406134 PLBD2Q8NHP8 589 aa11.73□□□□□ -0.53
MSH2-202ENST00000406134 AGXT2Q9BYV1 514 aa11.73□□□□□ -0.53
MSH2-202ENST00000406134 HMG20BQ9P0W2 317 aa11.73□□□□□ -0.53
MSH2-202ENST00000406134 R3HCC1Q9Y3T6 440 aaKnown RBP11.73□□□□□ -0.53
MSH2-202ENST00000406134 SCRN1Q12765 414 aa11.73□□□□□ -0.53
MSH2-202ENST00000406134 TPRNQ4KMQ1 711 aa11.73□□□□□ -0.53
MSH2-202ENST00000406134 SMARCC2Q8TAQ2 1214 aa11.73□□□□□ -0.53
MSH2-202ENST00000406134 LRP5O75197 1615 aa11.72□□□□□ -0.53
MSH2-202ENST00000406134 LARP1BQ659C4 914 aaKnown RBP11.72□□□□□ -0.53
MSH2-202ENST00000406134 FMNL2Q96PY5 1086 aa11.72□□□□□ -0.53
MSH2-202ENST00000406134 TTC12Q9H892 705 aaPredicted RBP11.72□□□□□ -0.53
MSH2-202ENST00000406134 TRHP20396 242 aaPredicted RBP11.72□□□□□ -0.53
MSH2-202ENST00000406134 NEXNQ0ZGT2 675 aa11.72□□□□□ -0.53
MSH2-202ENST00000406134 DDX46Q7L014 1031 aaKnown RBP11.72□□□□□ -0.53
MSH2-202ENST00000406134 SPTLC3Q9NUV7 552 aa11.72□□□□□ -0.53
MSH2-202ENST00000406134 A0A1B0GUL6 1792 aa11.72□□□□□ -0.53
MSH2-202ENST00000406134 LRP6O75581 1613 aa11.72□□□□□ -0.53
MSH2-202ENST00000406134 A0A087WZG4 1122 aa11.72□□□□□ -0.53
MSH2-202ENST00000406134 LETM1O95202 739 aaPredicted RBP11.72□□□□□ -0.53
MSH2-202ENST00000406134 PSMA5P28066 241 aa11.72□□□□□ -0.53
MSH2-202ENST00000406134 ILDR1Q86SU0 546 aaPredicted RBP11.72□□□□□ -0.53
MSH2-202ENST00000406134 EXOSC10Q01780 885 aaKnown RBP11.71□□□□□ -0.53
MSH2-202ENST00000406134 STK3Q13188 491 aa11.71□□□□□ -0.53
MSH2-202ENST00000406134 LEO1Q8WVC0 666 aaPredicted RBP11.71□□□□□ -0.53
MSH2-202ENST00000406134 PIBF1Q8WXW3 757 aa11.71□□□□□ -0.53
MSH2-202ENST00000406134 LMBR1LQ6UX01 489 aa11.71□□□□□ -0.54
MSH2-202ENST00000406134 Q6ZUG5 572 aa11.71□□□□□ -0.54
MSH2-202ENST00000406134 ATP6V1DQ9Y5K8 247 aa11.71□□□□□ -0.54
MSH2-202ENST00000406134 LRRC24Q50LG9 513 aa11.71□□□□□ -0.54
MSH2-202ENST00000406134 KBTBD3Q8NAB2 608 aa11.71□□□□□ -0.54
MSH2-202ENST00000406134 PHLPP1O60346 1717 aa11.7□□□□□ -0.54
MSH2-202ENST00000406134 RIC1Q4ADV7 1423 aa11.7□□□□□ -0.54
MSH2-202ENST00000406134 NR1I2O75469 434 aa11.7□□□□□ -0.54
MSH2-202ENST00000406134 MCMDC2Q4G0Z9 681 aa11.7□□□□□ -0.54
MSH2-202ENST00000406134 NEK1Q96PY6 1258 aa11.7□□□□□ -0.54
MSH2-202ENST00000406134 LRRC2Q9BYS8 371 aa11.7□□□□□ -0.54
MSH2-202ENST00000406134 PLCH1Q4KWH8 1693 aa11.7□□□□□ -0.54
MSH2-202ENST00000406134 ANKRD1Q15327 319 aa11.69□□□□□ -0.54
MSH2-202ENST00000406134 NKX2-3Q8TAU0 364 aa11.69□□□□□ -0.54
MSH2-202ENST00000406134 NSUN7Q8NE18 718 aaKnown RBP11.69□□□□□ -0.54
MSH2-202ENST00000406134 DDX11Q96FC9 970 aa11.69□□□□□ -0.54
MSH2-202ENST00000406134 ZNF594Q96JF6 807 aaPredicted RBP11.69□□□□□ -0.54
MSH2-202ENST00000406134 DNAJC2Q99543 621 aaKnown RBP11.69□□□□□ -0.54
MSH2-202ENST00000406134 PYCARDQ9ULZ3 195 aa11.69□□□□□ -0.54
MSH2-202ENST00000406134 MAST3O60307 1309 aa11.69□□□□□ -0.54
MSH2-202ENST00000406134 NEDD4P46934 1319 aa11.69□□□□□ -0.54
MSH2-202ENST00000406134 BCORQ6W2J9 1755 aa11.69□□□□□ -0.54
MSH2-202ENST00000406134 M0R2C6 588 aa11.69□□□□□ -0.54
MSH2-202ENST00000406134 NKX1-1Q15270 411 aaPredicted RBP11.69□□□□□ -0.54
MSH2-202ENST00000406134 ZMYM1Q5SVZ6 1142 aa11.69□□□□□ -0.54
MSH2-202ENST00000406134 FTOQ9C0B1 505 aaKnown RBP eCLIP11.69□□□□□ -0.54
MSH2-202ENST00000406134 TFIP11Q9UBB9 837 aaKnown RBP11.69□□□□□ -0.54
MSH2-202ENST00000406134 UQCRHLA0A096LP55 91 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 A1BGP04217 495 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 UQCRHP07919 91 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 TIMM10P62072 90 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 KRT85P78386 507 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 RNF20Q5VTR2 975 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 BRF1Q92994 677 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 PUS3Q9BZE2 481 aaKnown RBP11.68□□□□□ -0.54
MSH2-202ENST00000406134 COL4A1P02462 1669 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 PFKFB2O60825 505 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 TYRO3Q06418 890 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 CAMK4Q16566 473 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 DACT1Q9NYF0 836 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 KCNJ4P48050 445 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 HSP90AA2PQ14568 343 aaPredicted RBP11.68□□□□□ -0.54
MSH2-202ENST00000406134 GPR108Q9NPR9 543 aa11.68□□□□□ -0.54
MSH2-202ENST00000406134 CABP4P57796 275 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 KIAA2012Q0VF49 1180 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 LUZP1Q86V48 1076 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 TTC5Q8N0Z6 440 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 GOLPH3LQ9H4A5 285 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 CLSTN2Q9H4D0 955 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 PAG1Q9NWQ8 432 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 U3KPZ7 1027 aaPredicted RBP11.67□□□□□ -0.54
MSH2-202ENST00000406134 WDR17Q8IZU2 1322 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 HSPD1P10809 573 aaKnown RBP11.67□□□□□ -0.54
MSH2-202ENST00000406134 SNW1Q13573 536 aaKnown RBP11.67□□□□□ -0.54
MSH2-202ENST00000406134 NOLC1Q14978 699 aaKnown RBP eCLIP11.67□□□□□ -0.54
MSH2-202ENST00000406134 SASS6Q6UVJ0 657 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 ZNF710Q8N1W2 664 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 KIAA1524Q8TCG1 905 aa11.67□□□□□ -0.54
MSH2-202ENST00000406134 GOLIM4O00461 696 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 FDPSP14324 419 aaKnown RBP11.66□□□□□ -0.54
MSH2-202ENST00000406134 RBM10P98175 930 aaKnown RBP11.66□□□□□ -0.54
MSH2-202ENST00000406134 PLA2G4DQ86XP0 818 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 DSCC1Q9BVC3 393 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 CBX8Q9HC52 389 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 RREB1Q92766 1687 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 LAMB2P55268 1798 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 SCARF1Q14162 830 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 KRT32Q14532 448 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 CSPP1Q1MSJ5 1256 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 CKAP2LQ8IYA6 745 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 CHMP3Q9Y3E7 222 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 E7EWF7 191 aa11.66□□□□□ -0.54
MSH2-202ENST00000406134 GTF2F1P35269 517 aaKnown RBP eCLIP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms