RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 STOX1Q6ZVD7 989 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 NECAB1Q8N987 351 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 KBTBD3Q8NAB2 608 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 RAPGEF4Q8WZA2 1011 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 LARP6Q9BRS8 491 aaKnown RBP4.59□□□□□ -1.67
RTN4-209ENST00000405240 FBXO3Q9UK99 471 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 FOXP2O15409 715 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 ADCY5O95622 1261 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 CYP21A2P08686 494 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 LARP1BQ659C4 914 aaKnown RBP4.59□□□□□ -1.67
RTN4-209ENST00000405240 NAA16Q6N069 864 aaPredicted RBP4.59□□□□□ -1.67
RTN4-209ENST00000405240 SASS6Q6UVJ0 657 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 PROSER2Q86WR7 435 aaPredicted RBP4.59□□□□□ -1.67
RTN4-209ENST00000405240 SCAND2PQ9GZW5 306 aaPredicted RBP4.59□□□□□ -1.67
RTN4-209ENST00000405240 PDCL3Q9H2J4 239 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 KCNF1Q9H3M0 494 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 CLSTN2Q9H4D0 955 aa4.59□□□□□ -1.67
RTN4-209ENST00000405240 COL14A1Q05707 1796 aaKnown RBP4.59□□□□□ -1.68
RTN4-209ENST00000405240 DYNC1I1O14576 645 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 TPM3P06753 285 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 HMGB1P09429 215 aaKnown RBP4.59□□□□□ -1.68
RTN4-209ENST00000405240 KRT85P78386 507 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 TRIM28Q13263 835 aaKnown RBP4.59□□□□□ -1.68
RTN4-209ENST00000405240 ATL3Q6DD88 541 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 PLA2G4DQ86XP0 818 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 LEO1Q8WVC0 666 aaPredicted RBP4.59□□□□□ -1.68
RTN4-209ENST00000405240 PGBD1Q96JS3 809 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 NEK1Q96PY6 1258 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 FSD1Q9BTV5 496 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 ISCA1Q9BUE6 129 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 KIAA1551Q9HCM1 1747 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 DISP2A7MBM2 1401 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 WDR17Q8IZU2 1322 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 WDR19Q8NEZ3 1342 aa4.59□□□□□ -1.68
RTN4-209ENST00000405240 ROBO1Q9Y6N7 1651 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 HCLS1P14317 486 aaPredicted RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 LIG1P18858 919 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 CDC25BP30305 580 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 HMGN5P82970 282 aaKnown RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 AIMP1Q12904 312 aaKnown RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 TDRD7Q8NHU6 1098 aaKnown RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 DBNDD2Q9BQY9 259 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 ZSCAN16Q9H4T2 348 aaPredicted RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 SLIT2O94813 1529 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 SOS2Q07890 1332 aaPredicted RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 PCDH11XQ9BZA7 1347 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 PCDH11YQ9BZA8 1340 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 COL16A1Q07092 1604 aaPredicted RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 MYL6BP14649 208 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 KIAA2012Q0VF49 1180 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 SCRN1Q12765 414 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 CCDC191Q8NCU4 936 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 RNF214Q8ND24 703 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 MYRIPQ8NFW9 859 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 KIAA1524Q8TCG1 905 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 EDC3Q96F86 508 aaKnown RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 ZNF274Q96GC6 653 aaPredicted RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 ZNF512BQ96KM6 892 aaPredicted RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 KCND1Q9NSA2 647 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 DDX19AQ9NUU7 478 aaKnown RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 RCOR1Q9UKL0 485 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 RIC1Q4ADV7 1423 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 COL5A3P25940 1745 aaPredicted RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 CARMIL3Q8ND23 1372 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 CAVIN2O95810 425 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 CSF1RP07333 972 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 IL15P40933 162 aaPredicted RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 GIMAP6Q6P9H5 292 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 SARM1Q6SZW1 724 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 ILDR1Q86SU0 546 aaPredicted RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 NSUN7Q8NE18 718 aaKnown RBP4.58□□□□□ -1.68
RTN4-209ENST00000405240 ENGASEQ8NFI3 743 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 FAM200AQ8TCP9 573 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 PRIMPOLQ96LW4 560 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 NRAPQ86VF7 1730 aa4.58□□□□□ -1.68
RTN4-209ENST00000405240 FIBPO43427 364 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 CCDC192P0DO97 292 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 ZC3H6P61129 1189 aaKnown RBP4.57□□□□□ -1.68
RTN4-209ENST00000405240 SNW1Q13573 536 aaKnown RBP4.57□□□□□ -1.68
RTN4-209ENST00000405240 NOLC1Q14978 699 aaKnown RBP eCLIP4.57□□□□□ -1.688e-8■□□□□ 10
RTN4-209ENST00000405240 Q6ZUG5 572 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 DHX32Q7L7V1 743 aaKnown RBP4.57□□□□□ -1.68
RTN4-209ENST00000405240 UBE3BQ7Z3V4 1068 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 SIL1Q9H173 461 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 NEDD4P46934 1319 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 A0A087WZG4 1122 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 CHGBP05060 677 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 PRKCSHP14314 528 aaPredicted RBP4.57□□□□□ -1.68
RTN4-209ENST00000405240 TYRO3Q06418 890 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 MAP7D2Q96T17 732 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 CDHR2Q9BYE9 1310 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 NID2Q14112 1375 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 EYA2O00167 538 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 HSPD1P10809 573 aaKnown RBP4.57□□□□□ -1.68
RTN4-209ENST00000405240 IQCB1Q15051 598 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 MAP3K11Q16584 847 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 LMBR1LQ6UX01 489 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 CADPS2Q86UW7 1296 aa4.57□□□□□ -1.68
RTN4-209ENST00000405240 VSIG10Q8N0Z9 540 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms