RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 SF3B3Q15393 1217 aaKnown RBP31.07■■■□□ 2.56
CPNE1-205ENST00000401607 ATP2B3Q16720 1220 aa31.07■■■□□ 2.56
CPNE1-205ENST00000401607 RUFY2Q8WXA3 655 aa31.07■■■□□ 2.56
CPNE1-205ENST00000401607 SPEF2Q9C093 1822 aa31.06■■■□□ 2.56
CPNE1-205ENST00000401607 PDE8BO95263 885 aa31.05■■■□□ 2.56
CPNE1-205ENST00000401607 NBPF5PQ86XG9 351 aaPredicted RBP31.05■■■□□ 2.56
CPNE1-205ENST00000401607 PPIL4Q8WUA2 492 aaKnown RBP eCLIP31.05■■■□□ 2.56
CPNE1-205ENST00000401607 LSG1Q9H089 658 aaKnown RBP31.05■■■□□ 2.56
CPNE1-205ENST00000401607 MROH5Q6ZUA9 1318 aa31.05■■■□□ 2.56
CPNE1-205ENST00000401607 RFX7Q2KHR2 1363 aa31.05■■■□□ 2.56
CPNE1-205ENST00000401607 NMIQ13287 307 aaPredicted RBP31.05■■■□□ 2.56
CPNE1-205ENST00000401607 GTF2E1P29083 439 aaPredicted RBP31.04■■■□□ 2.56
CPNE1-205ENST00000401607 RABEP1Q15276 862 aa31.04■■■□□ 2.56
CPNE1-205ENST00000401607 FAM227BQ96M60 508 aa31.04■■■□□ 2.56
CPNE1-205ENST00000401607 RAD50Q92878 1312 aa31.04■■■□□ 2.56
CPNE1-205ENST00000401607 SSFA2P28290 1259 aa31.03■■■□□ 2.56
CPNE1-205ENST00000401607 MPHOSPH8Q99549 860 aa31.03■■■□□ 2.56
CPNE1-205ENST00000401607 PLSCR1O15162 318 aa31.02■■■□□ 2.56
CPNE1-205ENST00000401607 IFIT1P09914 478 aaKnown RBP31.02■■■□□ 2.56
CPNE1-205ENST00000401607 POTEAQ6S8J7 498 aa31.02■■■□□ 2.56
CPNE1-205ENST00000401607 HSCBQ8IWL3 235 aa31.02■■■□□ 2.56
CPNE1-205ENST00000401607 IGHMBP2P38935 993 aaKnown RBP31.02■■■□□ 2.56
CPNE1-205ENST00000401607 CCDC158Q5M9N0 1113 aa31.02■■■□□ 2.56
CPNE1-205ENST00000401607 DDX46Q7L014 1031 aaKnown RBP31.02■■■□□ 2.56
CPNE1-205ENST00000401607 SNRKQ9NRH2 765 aa31.02■■■□□ 2.56
CPNE1-205ENST00000401607 ARAP2Q8WZ64 1704 aa31.01■■■□□ 2.55
CPNE1-205ENST00000401607 CD2BP2O95400 341 aaKnown RBP31.01■■■□□ 2.55
CPNE1-205ENST00000401607 MCCP23508 829 aa31.01■■■□□ 2.55
CPNE1-205ENST00000401607 NFIXQ14938 502 aa31.01■■■□□ 2.55
CPNE1-205ENST00000401607 GORABQ5T7V8 394 aa31.01■■■□□ 2.55
CPNE1-205ENST00000401607 TPTE2Q6XPS3 522 aa31.01■■■□□ 2.55
CPNE1-205ENST00000401607 FBXO41Q8TF61 875 aa31.01■■■□□ 2.55
CPNE1-205ENST00000401607 PAG1Q9NWQ8 432 aa31.01■■■□□ 2.55
CPNE1-205ENST00000401607 A0A0D9SFI3 127 aa31■■■□□ 2.55
CPNE1-205ENST00000401607 FGFR2P21802 821 aa31■■■□□ 2.55
CPNE1-205ENST00000401607 TTC39AQ5SRH9 613 aa31■■■□□ 2.55
CPNE1-205ENST00000401607 KBTBD3Q8NAB2 608 aa31■■■□□ 2.55
CPNE1-205ENST00000401607 PALD1Q9ULE6 856 aa31■■■□□ 2.55
CPNE1-205ENST00000401607 CARMIL3Q8ND23 1372 aa31■■■□□ 2.55
CPNE1-205ENST00000401607 GOLIM4O00461 696 aa31■■■□□ 2.55
CPNE1-205ENST00000401607 APBA3O96018 575 aa31■■■□□ 2.55
CPNE1-205ENST00000401607 HELBQ8NG08 1087 aaPredicted RBP31■■■□□ 2.55
CPNE1-205ENST00000401607 CDC5LQ99459 802 aaKnown RBP31■■■□□ 2.55
CPNE1-205ENST00000401607 TNS1Q9HBL0 1735 aaKnown RBP30.99■■■□□ 2.55
CPNE1-205ENST00000401607 HSPA4P34932 840 aa30.99■■■□□ 2.55
CPNE1-205ENST00000401607 PUM3Q15397 648 aaKnown RBP30.99■■■□□ 2.55
CPNE1-205ENST00000401607 IL17RAQ96F46 866 aa30.99■■■□□ 2.55
CPNE1-205ENST00000401607 GYS1P13807 737 aa30.98■■■□□ 2.55
CPNE1-205ENST00000401607 ANAPC15P60006 121 aa30.98■■■□□ 2.55
CPNE1-205ENST00000401607 KIAA1211Q6ZU35 1233 aa30.98■■■□□ 2.55
CPNE1-205ENST00000401607 MED23Q9ULK4 1368 aa30.98■■■□□ 2.55
CPNE1-205ENST00000401607 TNRC6CQ9HCJ0 1690 aaKnown RBP30.97■■■□□ 2.55
CPNE1-205ENST00000401607 CCDC24Q8N4L8 307 aa30.97■■■□□ 2.55
CPNE1-205ENST00000401607 LPIN2Q92539 896 aa30.97■■■□□ 2.55
CPNE1-205ENST00000401607 HMGB2P26583 209 aaKnown RBP30.96■■■□□ 2.55
CPNE1-205ENST00000401607 PTH1RQ03431 593 aa30.96■■■□□ 2.55
CPNE1-205ENST00000401607 SCARF1Q14162 830 aa30.96■■■□□ 2.55
CPNE1-205ENST00000401607 NLRP3Q96P20 1036 aa30.96■■■□□ 2.55
CPNE1-205ENST00000401607 TAF1P21675 1872 aa30.96■■■□□ 2.55
CPNE1-205ENST00000401607 A0A1B0GUL6 1792 aa30.95■■■□□ 2.54
CPNE1-205ENST00000401607 TAF5LO75529 589 aa30.94■■■□□ 2.54
CPNE1-205ENST00000401607 CHGBP05060 677 aa30.94■■■□□ 2.54
CPNE1-205ENST00000401607 ANKRD18AQ8IVF6 992 aa30.94■■■□□ 2.54
CPNE1-205ENST00000401607 ZNF512BQ96KM6 892 aaPredicted RBP30.94■■■□□ 2.54
CPNE1-205ENST00000401607 ANTXR1Q9H6X2 564 aa30.94■■■□□ 2.54
CPNE1-205ENST00000401607 CCDC171Q6TFL3 1326 aa30.94■■■□□ 2.54
CPNE1-205ENST00000401607 ZNF827Q17R98 1081 aa30.94■■■□□ 2.54
CPNE1-205ENST00000401607 CHRNDQ07001 517 aa30.93■■■□□ 2.54
CPNE1-205ENST00000401607 TICAM2Q86XR7 235 aa30.93■■■□□ 2.54
CPNE1-205ENST00000401607 CELF1Q92879 486 aaKnown RBP30.92■■■□□ 2.54
CPNE1-205ENST00000401607 AKAP11Q9UKA4 1901 aa30.92■■■□□ 2.54
CPNE1-205ENST00000401607 SNAP23O00161 211 aa30.92■■■□□ 2.54
CPNE1-205ENST00000401607 SLC5A1P13866 664 aa30.92■■■□□ 2.54
CPNE1-205ENST00000401607 FKBP4Q02790 459 aaKnown RBP eCLIP30.92■■■□□ 2.54
CPNE1-205ENST00000401607 ZNF589Q86UQ0 364 aaPredicted RBP30.92■■■□□ 2.54
CPNE1-205ENST00000401607 AKT1S1Q96B36 256 aa30.92■■■□□ 2.54
CPNE1-205ENST00000401607 CCDC102BQ68D86 513 aa30.91■■■□□ 2.54
CPNE1-205ENST00000401607 BSDC1Q9NW68 430 aaPredicted RBP30.91■■■□□ 2.54
CPNE1-205ENST00000401607 K7ELQ4 463 aaPredicted RBP30.9■■■□□ 2.54
CPNE1-205ENST00000401607 MCAMP43121 646 aa30.9■■■□□ 2.54
CPNE1-205ENST00000401607 ZAP70P43403 619 aa30.9■■■□□ 2.54
CPNE1-205ENST00000401607 PHKA1P46020 1223 aa30.9■■■□□ 2.54
CPNE1-205ENST00000401607 RGPD3A6NKT7 1758 aaPredicted RBP30.9■■■□□ 2.54
CPNE1-205ENST00000401607 RGPD4Q7Z3J3 1758 aa30.9■■■□□ 2.54
CPNE1-205ENST00000401607 TM4SF1P30408 202 aa30.89■■■□□ 2.54
CPNE1-205ENST00000401607 PI16Q6UXB8 463 aa30.89■■■□□ 2.54
CPNE1-205ENST00000401607 CNBD1Q8NA66 436 aa30.89■■■□□ 2.54
CPNE1-205ENST00000401607 ARID4AP29374 1257 aaPredicted RBP30.89■■■□□ 2.54
CPNE1-205ENST00000401607 MAP4K1Q92918 833 aa30.89■■■□□ 2.54
CPNE1-205ENST00000401607 NPHP1O15259 732 aa30.88■■■□□ 2.53
CPNE1-205ENST00000401607 PRR5LQ6MZQ0 368 aa30.88■■■□□ 2.53
CPNE1-205ENST00000401607 SEC62Q99442 399 aaKnown RBP30.88■■■□□ 2.53
CPNE1-205ENST00000401607 SLKQ9H2G2 1235 aaPredicted RBP30.88■■■□□ 2.53
CPNE1-205ENST00000401607 SNX14Q9Y5W7 946 aa30.88■■■□□ 2.53
CPNE1-205ENST00000401607 SPRYD3Q8NCJ5 442 aa30.87■■■□□ 2.53
CPNE1-205ENST00000401607 SLFNL1Q499Z3 407 aa30.87■■■□□ 2.53
CPNE1-205ENST00000401607 RASEFQ8IZ41 740 aa30.87■■■□□ 2.53
CPNE1-205ENST00000401607 TFCP2L1Q9NZI6 479 aa30.87■■■□□ 2.53
CPNE1-205ENST00000401607 ST18O60284 1047 aa30.86■■■□□ 2.53
CPNE1-205ENST00000401607 UQCRFS1P1P0C7P4 283 aa30.86■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms