RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 STX6O43752 255 aa13.02□□□□□ -0.33
TTC28-201ENST00000397906 GPATCH8Q9UKJ3 1502 aaKnown RBP13.02□□□□□ -0.33
TTC28-201ENST00000397906 PDIA4P13667 645 aaKnown RBP13.02□□□□□ -0.33
TTC28-201ENST00000397906 TFCP2Q12800 502 aa13.02□□□□□ -0.33
TTC28-201ENST00000397906 LMAN1P49257 510 aa13.02□□□□□ -0.33
TTC28-201ENST00000397906 YEATS4O95619 227 aa13.02□□□□□ -0.33
TTC28-201ENST00000397906 UBE4AQ14139 1066 aa13.02□□□□□ -0.33
TTC28-201ENST00000397906 EAPPQ56P03 285 aaPredicted RBP13.02□□□□□ -0.33
TTC28-201ENST00000397906 KSR2Q6VAB6 950 aa13.02□□□□□ -0.33
TTC28-201ENST00000397906 PLCH2O75038 1416 aa13.02□□□□□ -0.33
TTC28-201ENST00000397906 MRPS9P82933 396 aaKnown RBP13.01□□□□□ -0.33
TTC28-201ENST00000397906 ZYXQ15942 572 aaKnown RBP13.01□□□□□ -0.33
TTC28-201ENST00000397906 PLEKHH1Q9ULM0 1364 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 ALG1Q9BT22 464 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 MCM4P33991 863 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 TERF1P54274 439 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 HOOK3Q86VS8 718 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 ZKSCAN3Q9BRR0 538 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 KRT24Q2M2I5 525 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 RXRAP19793 462 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 EYA3Q99504 573 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 FLT4P35916 1363 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 IL15P40933 162 aaPredicted RBP13.01□□□□□ -0.33
TTC28-201ENST00000397906 IFFO1Q0D2I5 559 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 ZMYM3Q14202 1370 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 CNNM2Q9H8M5 875 aa13.01□□□□□ -0.33
TTC28-201ENST00000397906 MAP3K5Q99683 1374 aa13□□□□□ -0.33
TTC28-201ENST00000397906 TRMT1Q9NXH9 659 aaKnown RBP13□□□□□ -0.33
TTC28-201ENST00000397906 KIF4BQ2VIQ3 1234 aa13□□□□□ -0.33
TTC28-201ENST00000397906 CCDC91Q7Z6B0 441 aa13□□□□□ -0.33
TTC28-201ENST00000397906 RRP36Q96EU6 259 aaKnown RBP13□□□□□ -0.33
TTC28-201ENST00000397906 CTTNBP2Q8WZ74 1663 aa13□□□□□ -0.33
TTC28-201ENST00000397906 GOLGA6L7A0A1B0GV03 622 aa13□□□□□ -0.33
TTC28-201ENST00000397906 FAM89AQ96GI7 184 aa13□□□□□ -0.33
TTC28-201ENST00000397906 ATP10BO94823 1461 aa13□□□□□ -0.33
TTC28-201ENST00000397906 UHRF1BP1Q6BDS2 1440 aa13□□□□□ -0.33
TTC28-201ENST00000397906 UQCRHLA0A096LP55 91 aa13□□□□□ -0.33
TTC28-201ENST00000397906 UQCRHP07919 91 aa13□□□□□ -0.33
TTC28-201ENST00000397906 MCMDC2Q4G0Z9 681 aa13□□□□□ -0.33
TTC28-201ENST00000397906 PICK1Q9NRD5 415 aa13□□□□□ -0.33
TTC28-201ENST00000397906 APBA3O96018 575 aa13□□□□□ -0.33
TTC28-201ENST00000397906 Q6ZUG5 572 aa13□□□□□ -0.33
TTC28-201ENST00000397906 TMC6Q7Z403 805 aa13□□□□□ -0.33
TTC28-201ENST00000397906 UNC13AQ9UPW8 1703 aa13□□□□□ -0.33
TTC28-201ENST00000397906 USO1O60763 962 aaKnown RBP13□□□□□ -0.33
TTC28-201ENST00000397906 USP21Q9UK80 565 aa13□□□□□ -0.33
TTC28-201ENST00000397906 ZSCAN12O43309 604 aa13□□□□□ -0.33
TTC28-201ENST00000397906 DCAF5Q96JK2 942 aa13□□□□□ -0.33
TTC28-201ENST00000397906 RPRD2Q5VT52 1461 aaKnown RBP13□□□□□ -0.33
TTC28-201ENST00000397906 PABPN1LA6NDY0 278 aaKnown RBP12.99□□□□□ -0.33
TTC28-201ENST00000397906 GJC1P36383 396 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 CIZ1Q9ULV3 898 aaPredicted RBP12.99□□□□□ -0.33
TTC28-201ENST00000397906 HMG20BQ9P0W2 317 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 TNNI2P48788 182 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 RRAGBQ5VZM2 374 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 BICC1Q9H694 974 aaKnown RBP12.99□□□□□ -0.33
TTC28-201ENST00000397906 C6orf50Q9HD87 102 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 NMIQ13287 307 aaPredicted RBP12.99□□□□□ -0.33
TTC28-201ENST00000397906 TAF12Q16514 161 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 ORAI2Q96SN7 254 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 ASXL1Q8IXJ9 1541 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 MRVI1Q9Y6F6 885 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 HCLS1P14317 486 aaPredicted RBP12.99□□□□□ -0.33
TTC28-201ENST00000397906 MARCKSP29966 332 aaPredicted RBP12.99□□□□□ -0.33
TTC28-201ENST00000397906 MCM7P33993 719 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 RALGAPBQ86X10 1494 aa12.99□□□□□ -0.33
TTC28-201ENST00000397906 NBPF7P0C2Y1 421 aaPredicted RBP12.99□□□□□ -0.33
TTC28-201ENST00000397906 NCBP1Q09161 790 aaKnown RBP12.98□□□□□ -0.33
TTC28-201ENST00000397906 IGHDP01880 384 aa12.98□□□□□ -0.33
TTC28-201ENST00000397906 FAM114A1Q8IWE2 563 aa12.98□□□□□ -0.33
TTC28-201ENST00000397906 URI1O94763 535 aaPredicted RBP12.98□□□□□ -0.33
TTC28-201ENST00000397906 RNMTO43148 476 aaKnown RBP12.98□□□□□ -0.33
TTC28-201ENST00000397906 HOXC9P31274 260 aa12.98□□□□□ -0.33
TTC28-201ENST00000397906 MAP2K1Q02750 393 aaPredicted RBP12.98□□□□□ -0.33
TTC28-201ENST00000397906 ANKRD2Q9GZV1 360 aa12.98□□□□□ -0.33
TTC28-201ENST00000397906 TRAPPC8Q9Y2L5 1435 aa12.98□□□□□ -0.33
TTC28-201ENST00000397906 CRACR2AQ9BSW2 395 aa12.98□□□□□ -0.33
TTC28-201ENST00000397906 RBM8AQ9Y5S9 174 aaKnown RBP12.98□□□□□ -0.33
TTC28-201ENST00000397906 JADE2Q9NQC1 790 aa12.98□□□□□ -0.33
TTC28-201ENST00000397906 BACH1O14867 736 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 HLTFQ14527 1009 aaKnown RBP eCLIP12.97□□□□□ -0.331e-6■□□□□ 10.5
TTC28-201ENST00000397906 ALS2CR12Q96Q35 445 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 BEGAINQ9BUH8 593 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 ZFYP08048 801 aaPredicted RBP12.97□□□□□ -0.33
TTC28-201ENST00000397906 ARL1P40616 181 aaPredicted RBP12.97□□□□□ -0.33
TTC28-201ENST00000397906 TBC1D5Q92609 795 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 EYA1Q99502 592 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 POLKQ9UBT6 870 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 SDSP20132 328 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 PLIN2Q99541 437 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 GOLGA6L10A0A0M3HER8 536 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 PLCG2P16885 1265 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 PTPN14Q15678 1187 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 PPP4R3BQ5MIZ7 849 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 UBXN4Q92575 508 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 CCDC102BQ68D86 513 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 USP25Q9UHP3 1055 aa12.97□□□□□ -0.33
TTC28-201ENST00000397906 CFAP65Q6ZU64 1925 aaKnown RBP12.97□□□□□ -0.33
TTC28-201ENST00000397906 RBM25P49756 843 aaKnown RBP12.97□□□□□ -0.33
TTC28-201ENST00000397906 HOMER2Q9NSB8 354 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms