RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 BRF1Q92994 677 aa13.45□□□□□ -0.26
SYNPO-202ENST00000394243 LRRC2Q9BYS8 371 aa13.45□□□□□ -0.26
SYNPO-202ENST00000394243 PCDHB15Q9Y5E8 787 aa13.45□□□□□ -0.26
SYNPO-202ENST00000394243 BAG1Q99933 345 aaPredicted RBP13.45□□□□□ -0.26
SYNPO-202ENST00000394243 HFM1A2PYH4 1435 aa13.45□□□□□ -0.26
SYNPO-202ENST00000394243 ZSCAN26Q16670 478 aa13.45□□□□□ -0.26
SYNPO-202ENST00000394243 ZNF287Q9HBT7 754 aa13.45□□□□□ -0.26
SYNPO-202ENST00000394243 CCDC172P0C7W6 258 aa13.45□□□□□ -0.26
SYNPO-202ENST00000394243 HDAC1Q13547 482 aaPredicted RBP13.45□□□□□ -0.26
SYNPO-202ENST00000394243 CEP85LQ5SZL2 805 aa13.45□□□□□ -0.26
SYNPO-202ENST00000394243 STAT6P42226 847 aa13.45□□□□□ -0.26
SYNPO-202ENST00000394243 TPD52P55327 224 aaPredicted RBP13.45□□□□□ -0.26
SYNPO-202ENST00000394243 RPUSD2Q8IZ73 545 aaKnown RBP13.45□□□□□ -0.26
SYNPO-202ENST00000394243 GSTA5Q7RTV2 222 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 SYCP3Q8IZU3 236 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 RGS22Q8NE09 1264 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.44□□□□□ -0.26
SYNPO-202ENST00000394243 TMEM110-MUSTN1A8MSY1 372 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 GCKP35557 465 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 UBXN1Q04323 297 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 ABCC11Q96J66 1382 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 MAP7D1Q3KQU3 841 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 RAB3IL1Q8TBN0 382 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 STRN4Q9NRL3 753 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 ARHGAP25P42331 645 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 FMNL3Q8IVF7 1028 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 RNF41Q9H4P4 317 aaPredicted RBP13.44□□□□□ -0.26
SYNPO-202ENST00000394243 CIB2O75838 187 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 RFC1P35251 1148 aaPredicted RBP13.44□□□□□ -0.26
SYNPO-202ENST00000394243 IGHMBP2P38935 993 aaKnown RBP13.44□□□□□ -0.26
SYNPO-202ENST00000394243 CHMP4BP1P59074 171 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 SEPT14Q6ZU15 432 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 MYD88Q99836 296 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 ZNF692Q9BU19 519 aaPredicted RBP13.44□□□□□ -0.26
SYNPO-202ENST00000394243 PTPRGP23470 1445 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 CFTRP13569 1480 aa13.44□□□□□ -0.26
SYNPO-202ENST00000394243 MAP3K12Q12852 859 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 LRCH2Q5VUJ6 765 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 PNMA8AQ86V59 439 aaPredicted RBP13.43□□□□□ -0.26
SYNPO-202ENST00000394243 PRPHP41219 470 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 ESYT1Q9BSJ8 1104 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 BCL2L12Q9HB09 334 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 STX17P56962 302 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 NEDD9Q14511 834 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 LMBR1Q8WVP7 490 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 ALG1Q9BT22 464 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 PPARDQ03181 441 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 TSC1Q92574 1164 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 ATF3P18847 181 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 WDHD1O75717 1129 aaPredicted RBP13.43□□□□□ -0.26
SYNPO-202ENST00000394243 PDE1CQ14123 709 aaPredicted RBP13.43□□□□□ -0.26
SYNPO-202ENST00000394243 TSNAXIP1Q2TAA8 658 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 ZNF444Q8N0Y2 327 aaPredicted RBP13.43□□□□□ -0.26
SYNPO-202ENST00000394243 NCOA7Q8NI08 942 aa13.43□□□□□ -0.26
SYNPO-202ENST00000394243 MKRN1Q9UHC7 482 aaKnown RBP13.43□□□□□ -0.26
SYNPO-202ENST00000394243 SEC24BO95487 1268 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 TNNC1P63316 161 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 DNAI2Q9GZS0 605 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 KLF18A0A0U1RQI7 1052 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 ATP2A1O14983 1001 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 MTRF1LQ9UGC7 380 aaKnown RBP13.42□□□□□ -0.26
SYNPO-202ENST00000394243 PTPRCP08575 1304 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 PSMA7O14818 248 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 ZNF853P0CG23 659 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 CCDC122Q5T0U0 273 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 TXNDC2Q86VQ3 553 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 HGSO14964 777 aaPredicted RBP13.42□□□□□ -0.26
SYNPO-202ENST00000394243 ESCO1Q5FWF5 840 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 SPTLC2O15270 562 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 ZWINTO95229 277 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 ATP6V1AP38606 617 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 PPP4R3AQ6IN85 833 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 MICAL1Q8TDZ2 1067 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 DHX58Q96C10 678 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 ALDH3A1P30838 453 aa13.42□□□□□ -0.26
SYNPO-202ENST00000394243 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.41□□□□□ -0.26
SYNPO-202ENST00000394243 GBP7Q8N8V2 638 aaPredicted RBP13.41□□□□□ -0.26
SYNPO-202ENST00000394243 TTC16Q8NEE8 873 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 VCXQ9H320 206 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 FAM184BQ9ULE4 1060 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 AKR1B15C9JRZ8 316 aaPredicted RBP13.41□□□□□ -0.26
SYNPO-202ENST00000394243 Q6ZUG5 572 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 NAPGQ99747 312 aaPredicted RBP13.41□□□□□ -0.26
SYNPO-202ENST00000394243 RPAINQ86UA6 219 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 CERS3Q8IU89 383 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 FERMT1Q9BQL6 677 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 VCX3BQ9H321 246 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 NKIRAS1Q9NYS0 192 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 BAIAP2L1Q9UHR4 511 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 ZC3H6P61129 1189 aaKnown RBP13.41□□□□□ -0.26
SYNPO-202ENST00000394243 LRRC27Q9C0I9 530 aa13.41□□□□□ -0.26
SYNPO-202ENST00000394243 SF3B2Q13435 895 aaKnown RBP13.4□□□□□ -0.26
SYNPO-202ENST00000394243 TTF1Q15361 905 aaPredicted RBP13.4□□□□□ -0.26
SYNPO-202ENST00000394243 TRMT1LQ7Z2T5 733 aaKnown RBP13.4□□□□□ -0.26
SYNPO-202ENST00000394243 CCDC110Q8TBZ0 833 aa13.4□□□□□ -0.26
SYNPO-202ENST00000394243 CABS1Q96KC9 395 aa13.4□□□□□ -0.26
SYNPO-202ENST00000394243 RBM8AQ9Y5S9 174 aaKnown RBP13.4□□□□□ -0.26
SYNPO-202ENST00000394243 STXBP4Q6ZWJ1 553 aa13.4□□□□□ -0.26
SYNPO-202ENST00000394243 ARHGEF2Q92974 986 aaKnown RBP13.4□□□□□ -0.26
SYNPO-202ENST00000394243 CASKIN1Q8WXD9 1431 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms