RNA–Protein interactions for RNA: ENST00000392128.6

SMARCAL1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SMARCAL1, Length 2,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-203ENST00000392128 ATP2B3Q16720 1220 aa13.83□□□□□ -0.19
SMARCAL1-203ENST00000392128 CCDC158Q5M9N0 1113 aa13.83□□□□□ -0.19
SMARCAL1-203ENST00000392128 SMIM5Q71RC9 77 aa13.83□□□□□ -0.19
SMARCAL1-203ENST00000392128 AMIGO3Q86WK7 504 aa13.83□□□□□ -0.19
SMARCAL1-203ENST00000392128 IL27Q8NEV9 243 aa13.83□□□□□ -0.19
SMARCAL1-203ENST00000392128 EDC3Q96F86 508 aaKnown RBP13.83□□□□□ -0.19
SMARCAL1-203ENST00000392128 NYXQ9GZU5 481 aa13.83□□□□□ -0.19
SMARCAL1-203ENST00000392128 MED23Q9ULK4 1368 aa13.83□□□□□ -0.2
SMARCAL1-203ENST00000392128 ST18O60284 1047 aa13.83□□□□□ -0.2
SMARCAL1-203ENST00000392128 PDE8BO95263 885 aa13.83□□□□□ -0.2
SMARCAL1-203ENST00000392128 ERFEQ4G0M1 354 aa13.83□□□□□ -0.2
SMARCAL1-203ENST00000392128 SLC10A5Q5PT55 438 aa13.83□□□□□ -0.2
SMARCAL1-203ENST00000392128 KBTBD3Q8NAB2 608 aa13.83□□□□□ -0.2
SMARCAL1-203ENST00000392128 FAM227BQ96M60 508 aa13.83□□□□□ -0.2
SMARCAL1-203ENST00000392128 PAG1Q9NWQ8 432 aa13.83□□□□□ -0.2
SMARCAL1-203ENST00000392128 PALD1Q9ULE6 856 aa13.83□□□□□ -0.2
SMARCAL1-203ENST00000392128 IFIT1P09914 478 aaKnown RBP13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 ADORA1P30542 326 aa13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 TRAPPC3LQ5T215 181 aa13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 SETDB2Q96T68 719 aa13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 A0A0D9SFI3 127 aa13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 TRIM37O94972 964 aa13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 SF3B3Q15393 1217 aaKnown RBP13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 GORABQ5T7V8 394 aa13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 SLKQ9H2G2 1235 aaPredicted RBP13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 SEC31BQ9NQW1 1179 aa13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 NDUFB9Q9Y6M9 179 aa13.82□□□□□ -0.2
SMARCAL1-203ENST00000392128 HMGB2P26583 209 aaKnown RBP13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 RFC4P35249 363 aa13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 TTC39AQ5SRH9 613 aa13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 BICDL1Q6ZP65 573 aa13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 DDX46Q7L014 1031 aaKnown RBP13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 UBE2Q2Q8WVN8 375 aa13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 ZNF512BQ96KM6 892 aaPredicted RBP13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 MPHOSPH8Q99549 860 aa13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 CCDC171Q6TFL3 1326 aa13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 A0A1B0GUL6 1792 aa13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 AKAP11Q9UKA4 1901 aa13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 IGHMBP2P38935 993 aaKnown RBP13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 PUM3Q15397 648 aaKnown RBP13.81□□□□□ -0.2
SMARCAL1-203ENST00000392128 GOLIM4O00461 696 aa13.8□□□□□ -0.2
SMARCAL1-203ENST00000392128 FGFR2P21802 821 aa13.8□□□□□ -0.2
SMARCAL1-203ENST00000392128 PTH1RQ03431 593 aa13.8□□□□□ -0.2
SMARCAL1-203ENST00000392128 CDC5LQ99459 802 aaKnown RBP13.8□□□□□ -0.2
SMARCAL1-203ENST00000392128 EP400Q96L91 3159 aa13.8□□□□□ -0.2
SMARCAL1-203ENST00000392128 MYH7P12883 1935 aa13.8□□□□□ -0.2
SMARCAL1-203ENST00000392128 NBPF5PQ86XG9 351 aaPredicted RBP13.8□□□□□ -0.2
SMARCAL1-203ENST00000392128 LPIN2Q92539 896 aa13.8□□□□□ -0.2
SMARCAL1-203ENST00000392128 KCNB2Q92953 911 aa13.8□□□□□ -0.2
SMARCAL1-203ENST00000392128 COL4A1P02462 1669 aa13.79□□□□□ -0.2
SMARCAL1-203ENST00000392128 PHF14O94880 888 aa13.79□□□□□ -0.2
SMARCAL1-203ENST00000392128 GTF2E1P29083 439 aaPredicted RBP13.79□□□□□ -0.2
SMARCAL1-203ENST00000392128 MAP4K1Q92918 833 aa13.79□□□□□ -0.2
SMARCAL1-203ENST00000392128 TPTE2Q6XPS3 522 aa13.79□□□□□ -0.2
SMARCAL1-203ENST00000392128 SPRYD3Q8NCJ5 442 aa13.79□□□□□ -0.2
SMARCAL1-203ENST00000392128 SNX14Q9Y5W7 946 aa13.79□□□□□ -0.2
SMARCAL1-203ENST00000392128 CARMIL3Q8ND23 1372 aa13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 SSFA2P28290 1259 aa13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 DDIT3P35638 169 aa13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 MCM2P49736 904 aa13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 NEK4P51957 841 aa13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 NECTIN1Q15223 517 aa13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 C3orf67Q6ZVT6 689 aa13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 TAF1P21675 1872 aa13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 MCMDC2Q4G0Z9 681 aa13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 ZNF589Q86UQ0 364 aaPredicted RBP13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 HELLSQ9NRZ9 838 aa13.78□□□□□ -0.2
SMARCAL1-203ENST00000392128 SLC5A1P13866 664 aa13.77□□□□□ -0.21
SMARCAL1-203ENST00000392128 ARID4AP29374 1257 aaPredicted RBP13.77□□□□□ -0.21
SMARCAL1-203ENST00000392128 LRRFIP1Q32MZ4 808 aaKnown RBP13.77□□□□□ -0.21
SMARCAL1-203ENST00000392128 ANKRD18AQ8IVF6 992 aa13.77□□□□□ -0.21
SMARCAL1-203ENST00000392128 RBM8AQ9Y5S9 174 aaKnown RBP13.77□□□□□ -0.21
SMARCAL1-203ENST00000392128 TAF5LO75529 589 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 RXRBP28702 533 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 FKBP4Q02790 459 aaKnown RBP eCLIP13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 SCARF1Q14162 830 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 TXNRD1Q16881 649 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 ZMYM1Q5SVZ6 1142 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 RASEFQ8IZ41 740 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 HELBQ8NG08 1087 aaPredicted RBP13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 NLRP3Q96P20 1036 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 CHMP5Q9NZZ3 219 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 RNF113AO15541 343 aaKnown RBP13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 HSP90AA1P07900 732 aaKnown RBP13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 UQCRFS1P1P0C7P4 283 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 CHRNDQ07001 517 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 CCDC102BQ68D86 513 aa13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 PRPF40BQ6NWY9 871 aaKnown RBP13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 BSDC1Q9NW68 430 aaPredicted RBP13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 TNRC6CQ9HCJ0 1690 aaKnown RBP13.76□□□□□ -0.21
SMARCAL1-203ENST00000392128 PLSCR1O15162 318 aa13.75□□□□□ -0.21
SMARCAL1-203ENST00000392128 MCAMP43121 646 aa13.75□□□□□ -0.21
SMARCAL1-203ENST00000392128 NFIXQ14938 502 aa13.75□□□□□ -0.21
SMARCAL1-203ENST00000392128 PROM2Q8N271 834 aa13.75□□□□□ -0.21
SMARCAL1-203ENST00000392128 CIZ1Q9ULV3 898 aaPredicted RBP13.75□□□□□ -0.21
SMARCAL1-203ENST00000392128 RGPD3A6NKT7 1758 aaPredicted RBP13.75□□□□□ -0.21
SMARCAL1-203ENST00000392128 RGPD4Q7Z3J3 1758 aa13.75□□□□□ -0.21
SMARCAL1-203ENST00000392128 CHGBP05060 677 aa13.75□□□□□ -0.21
SMARCAL1-203ENST00000392128 ZFYP08048 801 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms