RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 EDC3Q96F86 508 aaKnown RBP11.44□□□□□ -0.58
COL6A3-204ENST00000392003 COL5A2P05997 1499 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-204ENST00000392003 H7C1W4 665 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 GADD45BO75293 160 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-204ENST00000392003 ME3Q16798 604 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 ZSCAN30Q86W11 494 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 TMEM87AQ8NBN3 555 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 CCDC191Q8NCU4 936 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 RNF214Q8ND24 703 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 TEX13AQ9BXU3 409 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-204ENST00000392003 ASAP1Q9ULH1 1129 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 TOM1O60784 492 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 RPS6KB1P23443 525 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 IL15P40933 162 aaPredicted RBP11.43□□□□□ -0.58
COL6A3-204ENST00000392003 CCDC183Q5T5S1 534 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 MED23Q9ULK4 1368 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 PKD1L3Q7Z443 1732 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 AFDNP55196 1824 aaKnown RBP11.43□□□□□ -0.58
COL6A3-204ENST00000392003 NBPF26B4DH59 902 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 IGSF3O75054 1194 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 TAF5LO75529 589 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 MCMDC2Q4G0Z9 681 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 NBPF14Q5TI25 921 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 NBPF10Q6P3W6 841 aaKnown RBP11.43□□□□□ -0.58
COL6A3-204ENST00000392003 DNAJC10Q8IXB1 793 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 NBPF15Q8N660 670 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 HAUS7Q99871 368 aa11.43□□□□□ -0.58
COL6A3-204ENST00000392003 APPP05067 770 aa11.42□□□□□ -0.58
COL6A3-204ENST00000392003 PSEN1P49768 467 aa11.42□□□□□ -0.58
COL6A3-204ENST00000392003 RFX7Q2KHR2 1363 aa11.42□□□□□ -0.58
COL6A3-204ENST00000392003 GORABQ5T7V8 394 aa11.42□□□□□ -0.58
COL6A3-204ENST00000392003 DDX46Q7L014 1031 aaKnown RBP11.42□□□□□ -0.58
COL6A3-204ENST00000392003 ZNF589Q86UQ0 364 aaPredicted RBP11.42□□□□□ -0.58
COL6A3-204ENST00000392003 TPCN1Q9ULQ1 816 aa11.42□□□□□ -0.58
COL6A3-204ENST00000392003 PTMAP06454 111 aaKnown RBP11.41□□□□□ -0.58
COL6A3-204ENST00000392003 CASP7P55210 303 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 HS1BP3Q53T59 392 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 PIGBQ92521 554 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 NEK1Q96PY6 1258 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 MTMR6Q9Y217 621 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 FOXO4P98177 505 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 NKX1-1Q15270 411 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-204ENST00000392003 DDB1Q16531 1140 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 LRRFIP1Q32MZ4 808 aaKnown RBP11.41□□□□□ -0.58
COL6A3-204ENST00000392003 KBTBD3Q8NAB2 608 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 FAM184AQ8NB25 1140 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 TCEANC2Q96MN5 208 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 GPR108Q9NPR9 543 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 CEP126Q9P2H0 1117 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 KRT85P78386 507 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 TSGA10IPQ3SY00 556 aa11.41□□□□□ -0.58
COL6A3-204ENST00000392003 ALDH8A1Q9H2A2 487 aaPredicted RBP11.41□□□□□ -0.58
COL6A3-204ENST00000392003 GOLGA6L4A6NEF3 574 aa11.4□□□□□ -0.58
COL6A3-204ENST00000392003 EYA2O00167 538 aa11.4□□□□□ -0.58
COL6A3-204ENST00000392003 GOLIM4O00461 696 aa11.4□□□□□ -0.58
COL6A3-204ENST00000392003 STK3Q13188 491 aa11.4□□□□□ -0.58
COL6A3-204ENST00000392003 CCDC57Q2TAC2 916 aa11.4□□□□□ -0.58
COL6A3-204ENST00000392003 CCDC85AQ96PX6 553 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-204ENST00000392003 NDUFB9Q9Y6M9 179 aa11.4□□□□□ -0.58
COL6A3-204ENST00000392003 UBAP1LF5GYI3 381 aa11.4□□□□□ -0.58
COL6A3-204ENST00000392003 IFIT1P09914 478 aaKnown RBP11.4□□□□□ -0.58
COL6A3-204ENST00000392003 DNM1Q05193 864 aaKnown RBP11.4□□□□□ -0.58
COL6A3-204ENST00000392003 PAG1Q9NWQ8 432 aa11.4□□□□□ -0.58
COL6A3-204ENST00000392003 ARFGEF2Q9Y6D5 1785 aa11.4□□□□□ -0.58
COL6A3-204ENST00000392003 PARP4Q9UKK3 1724 aaKnown RBP11.4□□□□□ -0.58
COL6A3-204ENST00000392003 GPTP24298 496 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 USPL1Q5W0Q7 1092 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 ACSBG1Q96GR2 724 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 CCDC39Q9UFE4 941 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 LAMB4A4D0S4 1761 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 HMGB1P09429 215 aaKnown RBP11.39□□□□□ -0.59
COL6A3-204ENST00000392003 TIMM10P62072 90 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 IRX5P78411 483 aaPredicted RBP11.39□□□□□ -0.59
COL6A3-204ENST00000392003 CCDC129Q6ZRS4 1044 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 HELLSQ9NRZ9 838 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 TICAM2Q86XR7 235 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 NGLY1Q96IV0 654 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 ATG3Q9NT62 314 aa11.39□□□□□ -0.59
COL6A3-204ENST00000392003 UVSSAQ2YD98 709 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 CCDC158Q5M9N0 1113 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 PDLIM2Q96JY6 352 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 SEC62Q99442 399 aaKnown RBP11.38□□□□□ -0.59
COL6A3-204ENST00000392003 AKAP2Q9Y2D5 859 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 KIF3AQ9Y496 699 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 STRCQ7RTU9 1775 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 H3BQV1 296 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 IFFO2Q5TF58 517 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 ATG9AQ7Z3C6 839 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 FERMT3Q86UX7 667 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 SH3TC1Q8TE82 1336 aa11.38□□□□□ -0.59
COL6A3-204ENST00000392003 DTNBO60941 627 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 CIAO1O76071 339 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 TCIRG1Q13488 830 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 TOB2Q14106 344 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-204ENST00000392003 TTC39AQ5SRH9 613 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 ZNF594Q96JF6 807 aaPredicted RBP11.37□□□□□ -0.59
COL6A3-204ENST00000392003 ZNF609O15014 1411 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 A0A1B0GUL7 405 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 Q6ZUG5 572 aa11.37□□□□□ -0.59
COL6A3-204ENST00000392003 CDCA7Q9BWT1 371 aaPredicted RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms