RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 CABLES1Q8TDN4 633 aa17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 CHMP4CQ96CF2 233 aa17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 TM6SF1Q9BZW5 370 aa17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 OSBPL5Q9H0X9 879 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 SPG7Q9UQ90 795 aa17.14■□□□□ 0.33
VPS9D1-201ENST00000389386 PSDA5PKW4 1024 aaPredicted RBP17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 GNAT3A8MTJ3 354 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 SASH3O75995 380 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 PDCP20941 246 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 NBPF6Q5VWK0 638 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 NUTM1Q86Y26 1132 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 GOLGA5Q8TBA6 731 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 NBPF4Q96M43 638 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 CYP46A1Q9Y6A2 500 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 TBC1D8O95759 1140 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 TUBB4AP04350 444 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 PI4K2BQ8TCG2 481 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 BICD2Q8TD16 824 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 IL1RAPL2Q9NP60 686 aa17.13■□□□□ 0.33
VPS9D1-201ENST00000389386 SLAIN2Q9P270 581 aa17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 GNAI3P08754 354 aa17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 SMC1AQ14683 1233 aaKnown RBP17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 DHX40Q8IX18 779 aaKnown RBP17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 TPCN1Q9ULQ1 816 aa17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 RRP15Q9Y3B9 282 aaKnown RBP17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 STX1AQ16623 288 aa17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 BRINP3Q76B58 766 aa17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 NBPF11Q86T75 865 aa17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 HDAC5Q9UQL6 1122 aa17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 MARF1Q9Y4F3 1742 aaKnown RBP17.12■□□□□ 0.33
VPS9D1-201ENST00000389386 BECN2A8MW95 431 aa17.11■□□□□ 0.33
VPS9D1-201ENST00000389386 TADA3O75528 432 aa17.11■□□□□ 0.33
VPS9D1-201ENST00000389386 ZC3H6P61129 1189 aaKnown RBP17.11■□□□□ 0.33
VPS9D1-201ENST00000389386 CWC27Q6UX04 472 aaKnown RBP17.11■□□□□ 0.33
VPS9D1-201ENST00000389386 IQUBQ8NA54 791 aa17.11■□□□□ 0.33
VPS9D1-201ENST00000389386 KCNB2Q92953 911 aa17.11■□□□□ 0.33
VPS9D1-201ENST00000389386 PSD3Q9NYI0 1048 aa17.11■□□□□ 0.33
VPS9D1-201ENST00000389386 GCP02774 474 aa17.11■□□□□ 0.33
VPS9D1-201ENST00000389386 IMPACTQ9P2X3 320 aa17.11■□□□□ 0.33
VPS9D1-201ENST00000389386 LOC102724159A0A0B4J2E5 919 aa17.1■□□□□ 0.33
VPS9D1-201ENST00000389386 KCNJ6P48051 423 aa17.1■□□□□ 0.33
VPS9D1-201ENST00000389386 PWP2Q15269 919 aaKnown RBP17.1■□□□□ 0.33
VPS9D1-201ENST00000389386 GORABQ5T7V8 394 aa17.1■□□□□ 0.33
VPS9D1-201ENST00000389386 EXOC4Q96A65 974 aa17.1■□□□□ 0.33
VPS9D1-201ENST00000389386 AK7Q96M32 723 aa17.1■□□□□ 0.33
VPS9D1-201ENST00000389386 KCNG1Q9UIX4 513 aa17.1■□□□□ 0.33
VPS9D1-201ENST00000389386 ETF1P62495 437 aaKnown RBP17.1■□□□□ 0.33
VPS9D1-201ENST00000389386 PTH1RQ03431 593 aa17.1■□□□□ 0.33
VPS9D1-201ENST00000389386 LGR6Q9HBX8 967 aa17.1■□□□□ 0.33
VPS9D1-201ENST00000389386 TPM1P09493 284 aa17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 GUCY2CP25092 1073 aa17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 CCDC158Q5M9N0 1113 aa17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 PRPF40BQ6NWY9 871 aaKnown RBP17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 CC2D1AQ6P1N0 951 aaPredicted RBP17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 PSEN1P49768 467 aa17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 LARP1Q6PKG0 1096 aaKnown RBP17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 CNTROBQ8N137 903 aa17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 BRMS1Q9HCU9 246 aa17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 PHLPP2Q6ZVD8 1323 aa17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 ADCY9O60503 1353 aa17.09■□□□□ 0.33
VPS9D1-201ENST00000389386 EFCAB8A8MWE9 144 aa17.08■□□□□ 0.33
VPS9D1-201ENST00000389386 GIGYF1O75420 1035 aaPredicted RBP17.08■□□□□ 0.33
VPS9D1-201ENST00000389386 ARMCX5Q6P1M9 558 aa17.08■□□□□ 0.33
VPS9D1-201ENST00000389386 SAMD1Q6SPF0 538 aaPredicted RBP17.08■□□□□ 0.33
VPS9D1-201ENST00000389386 MNS1Q8NEH6 495 aa17.08■□□□□ 0.33
VPS9D1-201ENST00000389386 SRRTQ9BXP5 876 aaKnown RBP17.08■□□□□ 0.33
VPS9D1-201ENST00000389386 ADAM21Q9UKJ8 722 aa17.08■□□□□ 0.33
VPS9D1-201ENST00000389386 PLEKHG2Q9H7P9 1386 aa17.08■□□□□ 0.32
VPS9D1-201ENST00000389386 CTAGE5O15320 804 aa17.08■□□□□ 0.32
VPS9D1-201ENST00000389386 DDX54Q8TDD1 881 aaKnown RBP17.08■□□□□ 0.32
VPS9D1-201ENST00000389386 STK31Q9BXU1 1019 aa17.08■□□□□ 0.32
VPS9D1-201ENST00000389386 EIF2S2P20042 333 aaKnown RBP17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 GOLGA6L1Q8N7Z2 621 aa17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 CCDC150Q8NCX0 1101 aa17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 IP6K1Q92551 441 aa17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 DNAI1Q9UI46 699 aa17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 DCCP43146 1447 aa17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 A0A1B0GUL7 405 aa17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 ACTN2P35609 894 aa17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 NCAPGQ9BPX3 1015 aa17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 SOS1Q07889 1333 aaPredicted RBP17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 MAP3K5Q99683 1374 aa17.07■□□□□ 0.32
VPS9D1-201ENST00000389386 KCNQ3O43525 872 aa17.06■□□□□ 0.32
VPS9D1-201ENST00000389386 HOMER1Q86YM7 354 aa17.06■□□□□ 0.32
VPS9D1-201ENST00000389386 CCDC34Q96HJ3 373 aa17.06■□□□□ 0.32
VPS9D1-201ENST00000389386 CARD6Q9BX69 1037 aa17.06■□□□□ 0.32
VPS9D1-201ENST00000389386 BCCIPQ9P287 314 aaKnown RBP eCLIP17.06■□□□□ 0.32
VPS9D1-201ENST00000389386 JRKLQ9Y4A0 524 aa17.06■□□□□ 0.32
VPS9D1-201ENST00000389386 LTN1O94822 1766 aa17.06■□□□□ 0.32
VPS9D1-201ENST00000389386 A0A087WWV3 80 aa17.06■□□□□ 0.32
VPS9D1-201ENST00000389386 LMAN1P49257 510 aa17.06■□□□□ 0.32
VPS9D1-201ENST00000389386 ANO10Q9NW15 660 aa17.06■□□□□ 0.32
VPS9D1-201ENST00000389386 FLIIQ13045 1269 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 NECTIN1Q15223 517 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 LRRFIP1Q32MZ4 808 aaKnown RBP17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 TRIM65Q6PJ69 517 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 EPC1Q9H2F5 836 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 ANXA1P04083 346 aa17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 MYCNP04198 464 aaPredicted RBP17.05■□□□□ 0.32
VPS9D1-201ENST00000389386 EVCP57679 992 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms