RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 APLFQ8IW19 511 aaPredicted RBP9.87□□□□□ -0.83
LIG3-202ENST00000378526 PDZRN3Q9UPQ7 1066 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 SPAG1Q07617 926 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 PABPN1Q86U42 306 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIG3-202ENST00000378526 CCT6BQ92526 530 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 N4BP2L2Q92802 583 aaPredicted RBP9.87□□□□□ -0.83
LIG3-202ENST00000378526 PPP1R1BQ9UD71 204 aaPredicted RBP9.87□□□□□ -0.83
LIG3-202ENST00000378526 ZRANB2O95218 330 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIG3-202ENST00000378526 FAM160A1Q05DH4 1040 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 CNTLNQ9NXG0 1405 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 GOLGA6BA6NDN3 693 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 TMEM232C9JQI7 657 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 KRT13P13646 458 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 CCDC124Q96CT7 223 aaKnown RBP9.87□□□□□ -0.83
LIG3-202ENST00000378526 UTP11Q9Y3A2 253 aaKnown RBP9.87□□□□□ -0.83
LIG3-202ENST00000378526 KIF27Q86VH2 1401 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 HSPA1LP34931 641 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 ATP6V1E1P36543 226 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 PPP2R3AQ06190 1150 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 GSTA5Q7RTV2 222 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 NUDCD3Q8IVD9 361 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 NEUROD6Q96NK8 337 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 STRN4Q9NRL3 753 aa9.87□□□□□ -0.83
LIG3-202ENST00000378526 SRGAP3O43295 1099 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 MTMR3Q13615 1198 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 GNAI2P04899 355 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 ENAHQ8N8S7 591 aaPredicted RBP9.86□□□□□ -0.83
LIG3-202ENST00000378526 TNPO1Q92973 898 aaKnown RBP9.86□□□□□ -0.83
LIG3-202ENST00000378526 SDCCAG3Q96C92 435 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 MX2P20592 715 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 TMEM266Q2M3C6 531 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 PHACTR2O75167 634 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 EID1Q9Y6B2 187 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 AKR1B10O60218 316 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 GAS8O95995 478 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 STK3Q13188 491 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 TRIM6Q9C030 488 aaPredicted RBP9.86□□□□□ -0.83
LIG3-202ENST00000378526 PLEKHH2Q8IVE3 1493 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 FAM200AQ8TCP9 573 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 FBXO41Q8TF61 875 aa9.86□□□□□ -0.83
LIG3-202ENST00000378526 POLA1P09884 1462 aaPredicted RBP9.86□□□□□ -0.83
LIG3-202ENST00000378526 SH3BP5O60239 455 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 MAP7D3Q8IWC1 876 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 ARMC2Q8NEN0 867 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 SYNCQ9H7C4 482 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 SMIM23A6NLE4 172 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 TMCO5AQ8N6Q1 288 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 PANK1Q8TE04 598 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 GNL3LQ9NVN8 582 aaKnown RBP9.85□□□□□ -0.83
LIG3-202ENST00000378526 EPS15L1Q9UBC2 864 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 JRKLQ9Y4A0 524 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 GOLGA8QA0A0J9YX86 632 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 GOLGA8OA6NCC3 632 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 GOLGA8NF8WBI6 632 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 MED4Q9NPJ6 270 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 ANKRD20A4Q4UJ75 823 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 AMOTQ4VCS5 1084 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 ANKRD20A8PQ5CZ79 823 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 ANKRD20A2Q5SQ80 823 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 ANKRD20A1Q5TYW2 823 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 KRT75O95678 551 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 SYT1P21579 422 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 HPDP32754 393 aaPredicted RBP9.85□□□□□ -0.83
LIG3-202ENST00000378526 BIRC2Q13490 618 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 SRGAP1Q7Z6B7 1085 aa9.85□□□□□ -0.83
LIG3-202ENST00000378526 ZSCAN16Q9H4T2 348 aaPredicted RBP9.85□□□□□ -0.83
LIG3-202ENST00000378526 SCHIP1Q9P0W5 487 aaPredicted RBP9.85□□□□□ -0.83
LIG3-202ENST00000378526 RIPK4P57078 832 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 MRPL46Q9H2W6 279 aaKnown RBP9.84□□□□□ -0.83
LIG3-202ENST00000378526 U3KPZ7 1027 aaPredicted RBP9.84□□□□□ -0.83
LIG3-202ENST00000378526 SMG6Q86US8 1419 aaKnown RBP9.84□□□□□ -0.83
LIG3-202ENST00000378526 HNRNPMP52272 730 aaKnown RBP eCLIP9.84□□□□□ -0.83
LIG3-202ENST00000378526 EVCP57679 992 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 BASP1P80723 227 aaKnown RBP9.84□□□□□ -0.83
LIG3-202ENST00000378526 CCDC89Q8N998 374 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 BAG1Q99933 345 aaPredicted RBP9.84□□□□□ -0.83
LIG3-202ENST00000378526 MYH10P35580 1976 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 RNF40O75150 1001 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 EIF2S2P20042 333 aaKnown RBP9.84□□□□□ -0.83
LIG3-202ENST00000378526 CHD1LQ86WJ1 897 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.84□□□□□ -0.83
LIG3-202ENST00000378526 PFDN4Q9NQP4 134 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 SKIP12755 728 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 SEPT2Q15019 361 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 ANKRD20A3Q5VUR7 823 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 ZNF280CQ8ND82 737 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 VPS8Q8N3P4 1428 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 PSPC1Q8WXF1 523 aaKnown RBP9.84□□□□□ -0.83
LIG3-202ENST00000378526 RRP36Q96EU6 259 aaKnown RBP9.84□□□□□ -0.83
LIG3-202ENST00000378526 OPTNQ96CV9 577 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 MPHOSPH9Q99550 1183 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 IRAK4Q9NWZ3 460 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 E7EVH7 732 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 APAF1O14727 1248 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 CRCPO75575 148 aa9.84□□□□□ -0.83
LIG3-202ENST00000378526 GOLGA8AA7E2F4 631 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 GOLGA8BA8MQT2 603 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 NBPF7P0C2Y1 421 aaPredicted RBP9.83□□□□□ -0.84
LIG3-202ENST00000378526 FLOT2Q14254 428 aa9.83□□□□□ -0.84
LIG3-202ENST00000378526 PPP1R7Q15435 360 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms