RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 KSR2Q6VAB6 950 aa16.69■□□□□ 0.26
CLCNKA-202ENST00000375692 ZSCAN25Q6NSZ9 544 aa16.68■□□□□ 0.26
CLCNKA-202ENST00000375692 BICD2Q8TD16 824 aa16.68■□□□□ 0.26
CLCNKA-202ENST00000375692 CLSTN2Q9H4D0 955 aa16.68■□□□□ 0.26
CLCNKA-202ENST00000375692 OVOS2A0A0G2JMS6 1433 aa16.68■□□□□ 0.26
CLCNKA-202ENST00000375692 ALDH1L1O75891 902 aa16.67■□□□□ 0.26
CLCNKA-202ENST00000375692 CHGBP05060 677 aa16.67■□□□□ 0.26
CLCNKA-202ENST00000375692 ZNF165P49910 485 aa16.67■□□□□ 0.26
CLCNKA-202ENST00000375692 NAA30Q147X3 362 aaPredicted RBP16.67■□□□□ 0.26
CLCNKA-202ENST00000375692 PLA2G4DQ86XP0 818 aa16.67■□□□□ 0.26
CLCNKA-202ENST00000375692 CEBPZQ03701 1054 aaKnown RBP16.67■□□□□ 0.26
CLCNKA-202ENST00000375692 RNF20Q5VTR2 975 aa16.67■□□□□ 0.26
CLCNKA-202ENST00000375692 COL22A1Q8NFW1 1626 aaPredicted RBP16.67■□□□□ 0.26
CLCNKA-202ENST00000375692 SLC52A2Q9HAB3 445 aa16.67■□□□□ 0.26
CLCNKA-202ENST00000375692 DDX19AQ9NUU7 478 aaKnown RBP16.67■□□□□ 0.26
CLCNKA-202ENST00000375692 GRM8O00222 908 aa16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 HIP1O00291 1037 aa16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 ANKRD1Q15327 319 aa16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 CCDC144BQ3MJ40 725 aa16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 CCDC144CPQ8IYA2 1237 aa16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 CACTINQ8WUQ7 758 aaKnown RBP16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 DCAF5Q96JK2 942 aa16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 NDUFB9Q9Y6M9 179 aa16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 IGSF3O75054 1194 aa16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 GIGYF1O75420 1035 aaPredicted RBP16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 NCBP1Q09161 790 aaKnown RBP16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 UTP14CQ5TAP6 766 aaKnown RBP16.66■□□□□ 0.26
CLCNKA-202ENST00000375692 TNNT1P13805 278 aa16.65■□□□□ 0.26
CLCNKA-202ENST00000375692 HSPA1LP34931 641 aa16.65■□□□□ 0.26
CLCNKA-202ENST00000375692 RBM43Q6ZSC3 357 aaKnown RBP16.65■□□□□ 0.26
CLCNKA-202ENST00000375692 TDRD7Q8NHU6 1098 aaKnown RBP16.65■□□□□ 0.26
CLCNKA-202ENST00000375692 ARID5BQ14865 1188 aa16.65■□□□□ 0.26
CLCNKA-202ENST00000375692 BRF1Q92994 677 aa16.65■□□□□ 0.26
CLCNKA-202ENST00000375692 C8orf37Q96NL8 207 aa16.65■□□□□ 0.26
CLCNKA-202ENST00000375692 SNRKQ9NRH2 765 aa16.65■□□□□ 0.26
CLCNKA-202ENST00000375692 CLIP2Q9UDT6 1046 aa16.65■□□□□ 0.26
CLCNKA-202ENST00000375692 A0A087WWV3 80 aa16.64■□□□□ 0.25
CLCNKA-202ENST00000375692 TAF5LO75529 589 aa16.64■□□□□ 0.25
CLCNKA-202ENST00000375692 FOSBP53539 338 aa16.64■□□□□ 0.25
CLCNKA-202ENST00000375692 CHMP4AQ9BY43 222 aa16.64■□□□□ 0.25
CLCNKA-202ENST00000375692 LRRC2Q9BYS8 371 aa16.64■□□□□ 0.25
CLCNKA-202ENST00000375692 MED23Q9ULK4 1368 aa16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 PCDH11XQ9BZA7 1347 aa16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 PCDH11YQ9BZA8 1340 aa16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 RESTQ13127 1097 aa16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 CCDC129Q6ZRS4 1044 aa16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 LINS1Q8NG48 757 aa16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 PDIA4P13667 645 aaKnown RBP16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 CABP4P57796 275 aa16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 TPD52L1Q16890 204 aaPredicted RBP16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 ZNF790Q6PG37 636 aa16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 CCDC9Q9Y3X0 531 aaKnown RBP16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 COL15A1P39059 1388 aa16.63■□□□□ 0.25
CLCNKA-202ENST00000375692 COL14A1Q05707 1796 aaKnown RBP16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 ZNF592Q92610 1267 aa16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 GTF3C6Q969F1 213 aa16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 NGLY1Q96IV0 654 aa16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 FTOQ9C0B1 505 aaKnown RBP eCLIP16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 ALDH8A1Q9H2A2 487 aaPredicted RBP16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 H3BQV1 296 aa16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 HSP90B1P14625 803 aaKnown RBP16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 EPHA10Q5JZY3 1008 aa16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 IFFO2Q5TF58 517 aa16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 Q6ZUG5 572 aa16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 C11orf57Q6ZUT1 292 aaPredicted RBP16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 SEC62Q99442 399 aaKnown RBP16.62■□□□□ 0.25
CLCNKA-202ENST00000375692 KDM3BQ7LBC6 1761 aa16.61■□□□□ 0.25
CLCNKA-202ENST00000375692 SMTNL1A8MU46 457 aa16.61■□□□□ 0.25
CLCNKA-202ENST00000375692 PPFIA3O75145 1194 aa16.61■□□□□ 0.25
CLCNKA-202ENST00000375692 IGKV5-2P06315 115 aa16.61■□□□□ 0.25
CLCNKA-202ENST00000375692 ZNF496Q96IT1 587 aaPredicted RBP16.61■□□□□ 0.25
CLCNKA-202ENST00000375692 NEK1Q96PY6 1258 aa16.61■□□□□ 0.25
CLCNKA-202ENST00000375692 JCADQ9P266 1359 aa16.6■□□□□ 0.25
CLCNKA-202ENST00000375692 USP27XA6NNY8 438 aa16.6■□□□□ 0.25
CLCNKA-202ENST00000375692 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.6■□□□□ 0.25
CLCNKA-202ENST00000375692 GTPBP4Q9BZE4 634 aaKnown RBP16.6■□□□□ 0.25
CLCNKA-202ENST00000375692 HDAC5Q9UQL6 1122 aa16.6■□□□□ 0.25
CLCNKA-202ENST00000375692 IQCB1Q15051 598 aa16.6■□□□□ 0.25
CLCNKA-202ENST00000375692 TSGA10IPQ3SY00 556 aa16.6■□□□□ 0.25
CLCNKA-202ENST00000375692 HMG20BQ9P0W2 317 aa16.6■□□□□ 0.25
CLCNKA-202ENST00000375692 PKD1L3Q7Z443 1732 aa16.6■□□□□ 0.25
CLCNKA-202ENST00000375692 RIC3Q7Z5B4 369 aa16.59■□□□□ 0.25
CLCNKA-202ENST00000375692 SPATA31A1Q5TZJ5 1347 aa16.59■□□□□ 0.25
CLCNKA-202ENST00000375692 GOLGA6L19H0YKK7 550 aa16.59■□□□□ 0.25
CLCNKA-202ENST00000375692 MYL6BP14649 208 aa16.59■□□□□ 0.25
CLCNKA-202ENST00000375692 SCRN1Q12765 414 aa16.59■□□□□ 0.25
CLCNKA-202ENST00000375692 CCDC112Q8NEF3 446 aa16.59■□□□□ 0.25
CLCNKA-202ENST00000375692 ERCC4Q92889 916 aaPredicted RBP16.59■□□□□ 0.25
CLCNKA-202ENST00000375692 UTYO14607 1347 aa16.59■□□□□ 0.25
CLCNKA-202ENST00000375692 PDIA6Q15084 440 aa16.58■□□□□ 0.25
CLCNKA-202ENST00000375692 NKX1-1Q15270 411 aaPredicted RBP16.58■□□□□ 0.25
CLCNKA-202ENST00000375692 USPL1Q5W0Q7 1092 aa16.58■□□□□ 0.25
CLCNKA-202ENST00000375692 LRRC8AQ8IWT6 810 aa16.58■□□□□ 0.25
CLCNKA-202ENST00000375692 FBXW7Q969H0 707 aa16.58■□□□□ 0.25
CLCNKA-202ENST00000375692 DBNLQ9UJU6 430 aaKnown RBP16.58■□□□□ 0.25
CLCNKA-202ENST00000375692 SCN11AQ9UI33 1791 aa16.58■□□□□ 0.24
CLCNKA-202ENST00000375692 CYP21A2P08686 494 aa16.58■□□□□ 0.24
CLCNKA-202ENST00000375692 ADD1P35611 737 aaKnown RBP16.58■□□□□ 0.24
CLCNKA-202ENST00000375692 PIP4K2AP48426 406 aaPredicted RBP16.58■□□□□ 0.24
CLCNKA-202ENST00000375692 CCAR1Q8IX12 1150 aaKnown RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms