RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 BIRC3Q13489 604 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 RPS6KA2Q15349 733 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 DCLK2Q8N568 766 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 ABHD8Q96I13 439 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 YIPF2Q9BWQ6 316 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 TRPC5Q9UL62 973 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-202ENST00000375405 ZBTB21Q9ULJ3 1066 aa5.25□□□□□ -1.57
SCN1A-202ENST00000375405 GTPBP10A4D1E9 387 aaKnown RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 GCKP35557 465 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 PAFAH1B1P43034 410 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 RYBPQ8N488 228 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 IFT81Q8WYA0 676 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 SYNPO2Q9UMS6 1093 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 MINK1Q8N4C8 1332 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 CTAGE5O15320 804 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 MAN1A1P33908 653 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 SNX1Q13596 522 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 ZNF444Q8N0Y2 327 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 RMDN2Q96LZ7 410 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 TTC12Q9H892 705 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 AGTPBP1Q9UPW5 1226 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 SUGT1Q9Y2Z0 365 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 CCNB3Q8WWL7 1395 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 IFRD2Q12894 506 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 FSCBQ5H9T9 825 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 PDZD8Q8NEN9 1154 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 PNISRQ8TF01 805 aaKnown RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 ZNF692Q9BU19 519 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 CCDC94Q9BW85 323 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 TRAPPC10P48553 1259 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 DPYDQ12882 1025 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 RDH13Q8NBN7 331 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 NUP88Q99567 741 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 RIOK1Q9BRS2 568 aaKnown RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 RPGRIP1LQ68CZ1 1315 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 GRXCR2A6NFK2 248 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 ATP5J2-PTCD1G3V325 749 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 FMNL1O95466 1100 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 CCDC192P0DO97 292 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 NRG3P56975 720 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 MTERF2Q49AM1 385 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 CCDC122Q5T0U0 273 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 C16orf62Q7Z3J2 963 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 MRRFQ96E11 262 aaKnown RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 CDCA7Q9BWT1 371 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 NAA15Q9BXJ9 866 aaKnown RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 METTL14Q9HCE5 456 aaKnown RBP5.24□□□□□ -1.57
SCN1A-202ENST00000375405 BAG5Q9UL15 447 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 SETD5Q9C0A6 1442 aa5.24□□□□□ -1.57
SCN1A-202ENST00000375405 TXNDC9O14530 226 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 ZNF263O14978 683 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 FIBPO43427 364 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 MVPQ14764 893 aaKnown RBP5.23□□□□□ -1.57
SCN1A-202ENST00000375405 ERCC6LQ2NKX8 1250 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 CACNA2D3Q8IZS8 1091 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 AFAP1L2Q8N4X5 818 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 BBOF1Q8ND07 529 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 SPAG5Q96R06 1193 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 RAB34Q9BZG1 259 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 FBXO2Q9UK22 296 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-202ENST00000375405 IQANK1A0A1B0GTG1 560 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 IGHMBP2P38935 993 aaKnown RBP5.23□□□□□ -1.57
SCN1A-202ENST00000375405 SEC62Q99442 399 aaKnown RBP5.23□□□□□ -1.57
SCN1A-202ENST00000375405 HDAC9Q9UKV0 1011 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 HARSP12081 509 aaKnown RBP5.23□□□□□ -1.57
SCN1A-202ENST00000375405 BRD3Q15059 726 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 FAM47CQ5HY64 1035 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 STXBP4Q6ZWJ1 553 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 RAB11FIP4Q86YS3 637 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 IFT20Q8IY31 132 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 TSC1Q92574 1164 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 KSR2Q6VAB6 950 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 RNF169Q8NCN4 708 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 GBP5Q96PP8 586 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 CABP5Q9NP86 173 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 RAD18Q9NS91 495 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 STIM2Q9P246 746 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 CTAGE15A4D2H0 777 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 GADD45BO75293 160 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-202ENST00000375405 HLA-DPA1P20036 260 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 CABP4P57796 275 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 LMNB2Q03252 620 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 ITKQ08881 620 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 ZNF394Q53GI3 561 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 CCDC25Q86WR0 208 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 UBLCP1Q8WVY7 318 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-202ENST00000375405 LZICQ8WZA0 190 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 ZBTB9Q96C00 473 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 RPGRIP1Q96KN7 1286 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 VCX3BQ9H321 246 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 SLC13A4Q9UKG4 626 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 KIF7Q2M1P5 1343 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 GOLIM4O00461 696 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 ATP2A1O14983 1001 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 CCDC40Q4G0X9 1142 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 TRIML2Q8N7C3 387 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 CCT7Q99832 543 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 KLF15Q9UIH9 416 aa5.23□□□□□ -1.57
SCN1A-202ENST00000375405 POLR3GO15318 223 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-202ENST00000375405 IDH1O75874 414 aaKnown RBP5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms