RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 KMT5AQ9NQR1 393 aa10.72□□□□□ -0.69
UBR4-201ENST00000375218 RYDENQ9NUL5 291 aaKnown RBP10.72□□□□□ -0.69
UBR4-201ENST00000375218 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.72□□□□□ -0.69
UBR4-201ENST00000375218 RIMS2Q9UQ26 1411 aa10.72□□□□□ -0.69
UBR4-201ENST00000375218 CPSF1Q10570 1443 aaKnown RBP10.72□□□□□ -0.69
UBR4-201ENST00000375218 GIGYF2Q6Y7W6 1299 aaKnown RBP10.72□□□□□ -0.69
UBR4-201ENST00000375218 LMNTD2Q8IXW0 634 aa10.72□□□□□ -0.69
UBR4-201ENST00000375218 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.71□□□□□ -0.69
UBR4-201ENST00000375218 ACBD3Q9H3P7 528 aa10.71□□□□□ -0.69
UBR4-201ENST00000375218 GNEQ9Y223 722 aaKnown RBP10.71□□□□□ -0.69
UBR4-201ENST00000375218 RGPD5Q99666 1765 aa10.71□□□□□ -0.69
UBR4-201ENST00000375218 TPM2P07951 284 aa10.71□□□□□ -0.69
UBR4-201ENST00000375218 PDGFRBP09619 1106 aa10.71□□□□□ -0.69
UBR4-201ENST00000375218 CCDC172P0C7W6 258 aa10.71□□□□□ -0.69
UBR4-201ENST00000375218 XBP1P17861 261 aa10.71□□□□□ -0.69
UBR4-201ENST00000375218 CDC37L1Q7L3B6 337 aa10.71□□□□□ -0.69
UBR4-201ENST00000375218 TRIML1Q8N9V2 468 aa10.71□□□□□ -0.69
UBR4-201ENST00000375218 NWD1Q149M9 1564 aa10.71□□□□□ -0.7
UBR4-201ENST00000375218 DNAJC6O75061 913 aa10.71□□□□□ -0.7
UBR4-201ENST00000375218 C7P10643 843 aa10.71□□□□□ -0.7
UBR4-201ENST00000375218 TRAPPC10P48553 1259 aa10.71□□□□□ -0.7
UBR4-201ENST00000375218 GRXCR2A6NFK2 248 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 FBLN1P23142 703 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 CLK1P49759 484 aaKnown RBP10.7□□□□□ -0.7
UBR4-201ENST00000375218 RAD51AP2Q09MP3 1159 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 TBC1D10BQ4KMP7 808 aaPredicted RBP10.7□□□□□ -0.7
UBR4-201ENST00000375218 SPECC1Q5M775 1068 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 PANK3Q9H999 370 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 hCG_1984214I3L0E3 225 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 TNFRSF10BO14763 440 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 PLIN1O60240 522 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 SLC4A10Q6U841 1118 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 MYO1HQ8N1T3 1032 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 AKAP2Q9Y2D5 859 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 MAN1A1P33908 653 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 SRPK2P78362 688 aaKnown RBP10.7□□□□□ -0.7
UBR4-201ENST00000375218 Q3C1V9 767 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 RUNDC1Q96C34 613 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 ZNF521Q96K83 1311 aa10.7□□□□□ -0.7
UBR4-201ENST00000375218 TMEM2Q9UHN6 1383 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 ITM2BQ9Y287 266 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 A0A1W2PP64 1363 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 MYRIPQ8NFW9 859 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 ERP27Q96DN0 273 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 REPIN1Q9BWE0 567 aaKnown RBP10.69□□□□□ -0.7
UBR4-201ENST00000375218 CDC42BPGQ6DT37 1551 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 SPDYE2BA6NHP3 402 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 SPDYE5A6NIY4 337 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 BPNT1O95861 308 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 SPDYE6P0CI01 402 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 IL4RP24394 825 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 SLMAPQ14BN4 828 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 SPDYE2Q495Y8 402 aa10.69□□□□□ -0.7
UBR4-201ENST00000375218 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.69□□□□□ -0.7
UBR4-201ENST00000375218 TRIM6-TRIM34B2RNG4 842 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 CUEDC1Q9NWM3 386 aaPredicted RBP10.68□□□□□ -0.7
UBR4-201ENST00000375218 ASAP1Q9ULH1 1129 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 CCDC85CA6NKD9 419 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 KIF20AO95235 890 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 TINF2Q9BSI4 451 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 PNNQ9H307 717 aaKnown RBP10.68□□□□□ -0.7
UBR4-201ENST00000375218 CHCHD3Q9NX63 227 aaKnown RBP10.68□□□□□ -0.7
UBR4-201ENST00000375218 KANK1Q14678 1352 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 GPSM2P81274 684 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 NFX1Q12986 1120 aaKnown RBP10.68□□□□□ -0.7
UBR4-201ENST00000375218 GRM1Q13255 1194 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 INF2Q27J81 1249 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 NELL1Q92832 810 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 TBX3O15119 743 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 MLECQ14165 292 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 KSR2Q6VAB6 950 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 IQCF2Q8IXL9 164 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 SLC12A5Q9H2X9 1139 aa10.68□□□□□ -0.7
UBR4-201ENST00000375218 AVENQ9NQS1 362 aaPredicted RBP10.68□□□□□ -0.7
UBR4-201ENST00000375218 TRMT1Q9NXH9 659 aaKnown RBP10.67□□□□□ -0.7
UBR4-201ENST00000375218 KIF1CO43896 1103 aaKnown RBP10.67□□□□□ -0.7
UBR4-201ENST00000375218 GEMIN4P57678 1058 aaKnown RBP10.67□□□□□ -0.7
UBR4-201ENST00000375218 ARL10Q8N8L6 244 aa10.67□□□□□ -0.7
UBR4-201ENST00000375218 ZNF396Q96N95 335 aaPredicted RBP10.67□□□□□ -0.7
UBR4-201ENST00000375218 TRIM6Q9C030 488 aaPredicted RBP10.67□□□□□ -0.7
UBR4-201ENST00000375218 DIP2AQ14689 1571 aa10.67□□□□□ -0.7
UBR4-201ENST00000375218 CD151P48509 253 aa10.66□□□□□ -0.7
UBR4-201ENST00000375218 CCDC15Q0P6D6 951 aa10.66□□□□□ -0.7
UBR4-201ENST00000375218 TRAK1Q9UPV9 953 aa10.66□□□□□ -0.7
UBR4-201ENST00000375218 FGAP02671 866 aa10.66□□□□□ -0.7
UBR4-201ENST00000375218 SH3BGRP55822 239 aaPredicted RBP10.66□□□□□ -0.7
UBR4-201ENST00000375218 MKS1Q9NXB0 559 aa10.66□□□□□ -0.7
UBR4-201ENST00000375218 IFRD1O00458 451 aaPredicted RBP10.66□□□□□ -0.7
UBR4-201ENST00000375218 CTAGE5O15320 804 aa10.66□□□□□ -0.7
UBR4-201ENST00000375218 FIBPO43427 364 aa10.66□□□□□ -0.7
UBR4-201ENST00000375218 KRT18P05783 430 aaKnown RBP10.66□□□□□ -0.7
UBR4-201ENST00000375218 PPM1EQ8WY54 764 aa10.66□□□□□ -0.7
UBR4-201ENST00000375218 PPP1R12CQ9BZL4 782 aa10.66□□□□□ -0.7
UBR4-201ENST00000375218 LTN1O94822 1766 aa10.66□□□□□ -0.7
UBR4-201ENST00000375218 RAPGEF1Q13905 1077 aa10.65□□□□□ -0.7
UBR4-201ENST00000375218 FXNQ16595 210 aa10.65□□□□□ -0.7
UBR4-201ENST00000375218 CENPTQ96BT3 561 aa10.65□□□□□ -0.7
UBR4-201ENST00000375218 FECHP22830 423 aa10.65□□□□□ -0.7
UBR4-201ENST00000375218 PIK3CAP42336 1068 aa10.65□□□□□ -0.7
UBR4-201ENST00000375218 SLC20A2Q08357 652 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms