RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 BRD1O95696 1058 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 CYP19A1P11511 503 aaPredicted RBP10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 NCLP19338 710 aaKnown RBP10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 KCNJ4P48050 445 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 IFIT5Q13325 482 aaKnown RBP10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 TTF1Q15361 905 aaPredicted RBP10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 DDB1Q16531 1140 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 MCMDC2Q4G0Z9 681 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 CLEC4GQ6UXB4 293 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 FBXL16Q8N461 479 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 TTC14Q96N46 770 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 DSCC1Q9BVC3 393 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 CTNNA3Q9UI47 895 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 ZNF652Q9Y2D9 606 aa10.43□□□□□ -0.74
SNRNP40-202ENST00000373720 RTL9Q8NET4 1388 aa10.42□□□□□ -0.74
SNRNP40-202ENST00000373720 PTCD1O75127 700 aaKnown RBP10.42□□□□□ -0.74
SNRNP40-202ENST00000373720 PHF14O94880 888 aa10.42□□□□□ -0.74
SNRNP40-202ENST00000373720 LETM1O95202 739 aaPredicted RBP10.42□□□□□ -0.74
SNRNP40-202ENST00000373720 CD2BP2O95400 341 aaKnown RBP10.42□□□□□ -0.74
SNRNP40-202ENST00000373720 A1BGP04217 495 aa10.42□□□□□ -0.74
SNRNP40-202ENST00000373720 TFCP2Q12800 502 aa10.42□□□□□ -0.74
SNRNP40-202ENST00000373720 PA2G4Q9UQ80 394 aaKnown RBP10.42□□□□□ -0.74
SNRNP40-202ENST00000373720 MROH5Q6ZUA9 1318 aa10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 FSD2A1L4K1 749 aa10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 PDE8AO60658 829 aa10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 NT5C2P49902 561 aa10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 EPHA10Q5JZY3 1008 aa10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 TTLL7Q6ZT98 887 aa10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 ATG9AQ7Z3C6 839 aa10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 ANP32BQ92688 251 aaKnown RBP10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 PDRG1Q9NUG6 133 aa10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 DBNLQ9UJU6 430 aaKnown RBP10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 WNK3Q9BYP7 1800 aa10.41□□□□□ -0.74
SNRNP40-202ENST00000373720 CARMIL3Q8ND23 1372 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 RPAP1Q9BWH6 1393 aaPredicted RBP10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 SPATA31A5Q5VU36 1347 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 SPATA31A7Q8IWB4 1347 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 SLIT2O94813 1529 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 ANKRD18BA2A2Z9 1011 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 ATP5J2-PTCD1G3V325 749 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 UQCRFS1P1P0C7P4 283 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 TAF7LQ5H9L4 462 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 DCAF8Q5TAQ9 597 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 TSHZ3Q63HK5 1081 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 CREB3L3Q68CJ9 461 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 BLOC1S2Q6QNY1 142 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 SPRYD3Q8NCJ5 442 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 LLPHQ9BRT6 129 aaKnown RBP10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 CCDC8Q9H0W5 538 aaPredicted RBP10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 BOLA2Q9H3K6 86 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 PAG1Q9NWQ8 432 aa10.4□□□□□ -0.74
SNRNP40-202ENST00000373720 COL16A1Q07092 1604 aaPredicted RBP10.4□□□□□ -0.75
SNRNP40-202ENST00000373720 WDR19Q8NEZ3 1342 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 TOGARAM1Q9Y4F4 1720 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 TAF5LO75529 589 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 CASTP20810 708 aaKnown RBP10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 EIF5P55010 431 aaKnown RBP10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 NMIQ13287 307 aaPredicted RBP10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 ATL3Q6DD88 541 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 NLRP10Q86W26 655 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 DNAJC10Q8IXB1 793 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 ZNF34Q8IZ26 560 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 TMEM87AQ8NBN3 555 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 SIL1Q9H173 461 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 ASAP1Q9ULH1 1129 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 SMC3Q9UQE7 1217 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 RBM8AQ9Y5S9 174 aaKnown RBP10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 DDX49Q9Y6V7 483 aaKnown RBP10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 ZNF609O15014 1411 aa10.39□□□□□ -0.75
SNRNP40-202ENST00000373720 PHLPP1O60346 1717 aa10.38□□□□□ -0.75
SNRNP40-202ENST00000373720 SPATA31A6Q5VVP1 1343 aa10.38□□□□□ -0.75
SNRNP40-202ENST00000373720 ITGB4P16144 1822 aa10.38□□□□□ -0.75
SNRNP40-202ENST00000373720 SLC27A2O14975 620 aa10.38□□□□□ -0.75
SNRNP40-202ENST00000373720 IFIT1P09914 478 aaKnown RBP10.38□□□□□ -0.75
SNRNP40-202ENST00000373720 ZNF445P59923 1031 aa10.38□□□□□ -0.75
SNRNP40-202ENST00000373720 GORABQ5T7V8 394 aa10.38□□□□□ -0.75
SNRNP40-202ENST00000373720 ZBTB3Q9H5J0 574 aa10.38□□□□□ -0.75
SNRNP40-202ENST00000373720 CCDC87Q9NVE4 849 aa10.38□□□□□ -0.75
SNRNP40-202ENST00000373720 PALD1Q9ULE6 856 aa10.38□□□□□ -0.75
SNRNP40-202ENST00000373720 A0A1B0GUL7 405 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 RNF113AO15541 343 aaKnown RBP10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 RPS6KB1P23443 525 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 AK2P54819 239 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 CTSWP56202 376 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 TJP1Q07157 1748 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 VPS72Q15906 364 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 ZMYM1Q5SVZ6 1142 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 RC3H1Q5TC82 1133 aaKnown RBP10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 PRPF40BQ6NWY9 871 aaKnown RBP10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 NRAPQ86VF7 1730 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 DZIP3Q86Y13 1208 aaKnown RBP10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 JAKMIP1Q96N16 626 aaKnown RBP10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 NEK1Q96PY6 1258 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 CDC5LQ99459 802 aaKnown RBP10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 MTA3Q9BTC8 594 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 BCL11AQ9H165 835 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 CHMP3Q9Y3E7 222 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 RREB1Q92766 1687 aa10.37□□□□□ -0.75
SNRNP40-202ENST00000373720 ANKRD36CQ5JPF3 1778 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms