RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PSME1Q06323 249 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 TNNI3KQ59H18 835 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 STOX1Q6ZVD7 989 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 KCNH5Q8NCM2 988 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 ZSCAN16Q9H4T2 348 aaPredicted RBP19.27■□□□□ 0.68
SDC4-201ENST00000372733 FPGT-TNNI3KV9GXZ4 949 aa19.27■□□□□ 0.68
SDC4-201ENST00000372733 PPFIA3O75145 1194 aa19.26■□□□□ 0.67
SDC4-201ENST00000372733 ADD1P35611 737 aaKnown RBP19.26■□□□□ 0.67
SDC4-201ENST00000372733 FGD1P98174 961 aa19.26■□□□□ 0.67
SDC4-201ENST00000372733 CCAR1Q8IX12 1150 aaKnown RBP19.26■□□□□ 0.67
SDC4-201ENST00000372733 XAGE3Q8WTP9 111 aa19.26■□□□□ 0.67
SDC4-201ENST00000372733 GTPBP4Q9BZE4 634 aaKnown RBP19.26■□□□□ 0.67
SDC4-201ENST00000372733 CFAP45Q9UL16 551 aa19.26■□□□□ 0.67
SDC4-201ENST00000372733 U3KPZ7 1027 aaPredicted RBP19.26■□□□□ 0.67
SDC4-201ENST00000372733 NEXNQ0ZGT2 675 aa19.26■□□□□ 0.67
SDC4-201ENST00000372733 DDX46Q7L014 1031 aaKnown RBP19.26■□□□□ 0.67
SDC4-201ENST00000372733 ANKRD24Q8TF21 1146 aa19.26■□□□□ 0.67
SDC4-201ENST00000372733 CCDC9Q9Y3X0 531 aaKnown RBP19.26■□□□□ 0.67
SDC4-201ENST00000372733 STX1AQ16623 288 aa19.25■□□□□ 0.67
SDC4-201ENST00000372733 LRRC8AQ8IWT6 810 aa19.25■□□□□ 0.67
SDC4-201ENST00000372733 SMARCC2Q8TAQ2 1214 aa19.25■□□□□ 0.67
SDC4-201ENST00000372733 DBNDD2Q9BQY9 259 aa19.25■□□□□ 0.67
SDC4-201ENST00000372733 ESCO1Q5FWF5 840 aa19.25■□□□□ 0.67
SDC4-201ENST00000372733 SARM1Q6SZW1 724 aa19.25■□□□□ 0.67
SDC4-201ENST00000372733 NSUN7Q8NE18 718 aaKnown RBP19.25■□□□□ 0.67
SDC4-201ENST00000372733 USP16Q9Y5T5 823 aa19.25■□□□□ 0.67
SDC4-201ENST00000372733 IGSF3O75054 1194 aa19.24■□□□□ 0.67
SDC4-201ENST00000372733 CAVIN2O95810 425 aa19.24■□□□□ 0.67
SDC4-201ENST00000372733 CEP135Q66GS9 1140 aa19.24■□□□□ 0.67
SDC4-201ENST00000372733 PAXBP1Q9Y5B6 917 aa19.24■□□□□ 0.67
SDC4-201ENST00000372733 PTPDC1A2A3K4 754 aa19.24■□□□□ 0.67
SDC4-201ENST00000372733 PIP4K2AP48426 406 aaPredicted RBP19.24■□□□□ 0.67
SDC4-201ENST00000372733 SLFNL1Q499Z3 407 aa19.24■□□□□ 0.67
SDC4-201ENST00000372733 COPS6Q7L5N1 327 aa19.24■□□□□ 0.67
SDC4-201ENST00000372733 USP28Q96RU2 1077 aa19.24■□□□□ 0.67
SDC4-201ENST00000372733 SIPA1L3O60292 1781 aaPredicted RBP19.24■□□□□ 0.67
SDC4-201ENST00000372733 CTDNEP1O95476 244 aa19.23■□□□□ 0.67
SDC4-201ENST00000372733 RFX5P48382 616 aaPredicted RBP19.23■□□□□ 0.67
SDC4-201ENST00000372733 PTPN12Q05209 780 aaKnown RBP19.23■□□□□ 0.67
SDC4-201ENST00000372733 SYCP1Q15431 976 aa19.23■□□□□ 0.67
SDC4-201ENST00000372733 ERCC4Q92889 916 aaPredicted RBP19.23■□□□□ 0.67
SDC4-201ENST00000372733 MRFAP1L1Q96HT8 127 aa19.23■□□□□ 0.67
SDC4-201ENST00000372733 COPRSQ9NQ92 184 aa19.23■□□□□ 0.67
SDC4-201ENST00000372733 CTNNA3Q9UI47 895 aa19.23■□□□□ 0.67
SDC4-201ENST00000372733 PHRF1Q9P1Y6 1649 aaKnown RBP19.23■□□□□ 0.67
SDC4-201ENST00000372733 PFKFB2O60825 505 aa19.23■□□□□ 0.67
SDC4-201ENST00000372733 TRHP20396 242 aaPredicted RBP19.23■□□□□ 0.67
SDC4-201ENST00000372733 APOBRQ0VD83 1088 aa19.23■□□□□ 0.67
SDC4-201ENST00000372733 FILIP1Q7Z7B0 1213 aa19.23■□□□□ 0.67
SDC4-201ENST00000372733 FBXW7Q969H0 707 aa19.23■□□□□ 0.67
SDC4-201ENST00000372733 C5P01031 1676 aa19.23■□□□□ 0.67
SDC4-201ENST00000372733 GCP02774 474 aa19.22■□□□□ 0.67
SDC4-201ENST00000372733 GUCY1B3Q02153 619 aa19.22■□□□□ 0.67
SDC4-201ENST00000372733 MCMDC2Q4G0Z9 681 aa19.22■□□□□ 0.67
SDC4-201ENST00000372733 CCDC73Q6ZRK6 1079 aa19.22■□□□□ 0.67
SDC4-201ENST00000372733 ARHGEF25Q86VW2 580 aa19.22■□□□□ 0.67
SDC4-201ENST00000372733 METTL22Q9BUU2 404 aaPredicted RBP19.22■□□□□ 0.67
SDC4-201ENST00000372733 NCOA5Q9HCD5 579 aaKnown RBP19.22■□□□□ 0.67
SDC4-201ENST00000372733 RCOR1Q9UKL0 485 aa19.22■□□□□ 0.67
SDC4-201ENST00000372733 BECN2A8MW95 431 aa19.22■□□□□ 0.67
SDC4-201ENST00000372733 CCT2P78371 535 aaKnown RBP19.22■□□□□ 0.67
SDC4-201ENST00000372733 SNW1Q13573 536 aaKnown RBP19.22■□□□□ 0.67
SDC4-201ENST00000372733 NAA16Q6N069 864 aaPredicted RBP19.22■□□□□ 0.67
SDC4-201ENST00000372733 FEZ1Q99689 392 aa19.22■□□□□ 0.67
SDC4-201ENST00000372733 SKILP12757 684 aa19.21■□□□□ 0.67
SDC4-201ENST00000372733 UBE3BQ7Z3V4 1068 aa19.21■□□□□ 0.67
SDC4-201ENST00000372733 DHX40Q8IX18 779 aaKnown RBP19.21■□□□□ 0.67
SDC4-201ENST00000372733 A0A0G2JLW4 131 aa19.21■□□□□ 0.67
SDC4-201ENST00000372733 CCDC69A6NI79 296 aa19.21■□□□□ 0.67
SDC4-201ENST00000372733 CTAGE5O15320 804 aa19.21■□□□□ 0.67
SDC4-201ENST00000372733 KINO60870 393 aaKnown RBP19.21■□□□□ 0.67
SDC4-201ENST00000372733 ZNF790Q6PG37 636 aa19.21■□□□□ 0.67
SDC4-201ENST00000372733 NAP1L2Q9ULW6 460 aaPredicted RBP19.21■□□□□ 0.67
SDC4-201ENST00000372733 RFX7Q2KHR2 1363 aa19.21■□□□□ 0.67
SDC4-201ENST00000372733 LMOD2Q6P5Q4 547 aa19.21■□□□□ 0.66
SDC4-201ENST00000372733 FSIP1Q8NA03 581 aa19.21■□□□□ 0.66
SDC4-201ENST00000372733 HAUS7Q99871 368 aa19.21■□□□□ 0.66
SDC4-201ENST00000372733 LLPHQ9BRT6 129 aaKnown RBP19.21■□□□□ 0.66
SDC4-201ENST00000372733 OGFRQ9NZT2 677 aa19.21■□□□□ 0.66
SDC4-201ENST00000372733 RBM6P78332 1123 aaKnown RBP19.2■□□□□ 0.66
SDC4-201ENST00000372733 CCZ1BP86790 482 aa19.2■□□□□ 0.66
SDC4-201ENST00000372733 CCZ1P86791 482 aaPredicted RBP19.2■□□□□ 0.66
SDC4-201ENST00000372733 AOPEPQ8N6M6 819 aa19.2■□□□□ 0.66
SDC4-201ENST00000372733 TRMT1Q9NXH9 659 aaKnown RBP19.2■□□□□ 0.66
SDC4-201ENST00000372733 CGNQ9P2M7 1197 aaKnown RBP19.2■□□□□ 0.66
SDC4-201ENST00000372733 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.2■□□□□ 0.666e-6■■■■■ 27.5
SDC4-201ENST00000372733 AXIN2Q9Y2T1 843 aa19.2■□□□□ 0.66
SDC4-201ENST00000372733 V9GYY5 206 aaPredicted RBP19.2■□□□□ 0.66
SDC4-201ENST00000372733 MYH15Q9Y2K3 1946 aa19.2■□□□□ 0.66
SDC4-201ENST00000372733 ME1P48163 572 aa19.2■□□□□ 0.66
SDC4-201ENST00000372733 NYAP1Q6ZVC0 841 aa19.19■□□□□ 0.66
SDC4-201ENST00000372733 DHX32Q7L7V1 743 aaKnown RBP19.19■□□□□ 0.66
SDC4-201ENST00000372733 ILDR1Q86SU0 546 aaPredicted RBP19.19■□□□□ 0.66
SDC4-201ENST00000372733 ENGASEQ8NFI3 743 aa19.19■□□□□ 0.66
SDC4-201ENST00000372733 ZNF215Q9UL58 517 aaPredicted RBP19.19■□□□□ 0.66
SDC4-201ENST00000372733 FAM160A1Q05DH4 1040 aa19.19■□□□□ 0.66
SDC4-201ENST00000372733 LAMA4Q16363 1823 aa19.18■□□□□ 0.66
SDC4-201ENST00000372733 NEMFO60524 1076 aa19.18■□□□□ 0.66
SDC4-201ENST00000372733 PTPN14Q15678 1187 aa19.18■□□□□ 0.66
SDC4-201ENST00000372733 KBTBD3Q8NAB2 608 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 216.8 ms