RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 ADM5C9JUS6 153 aa18.07■□□□□ 0.48
VPS29-201ENST00000360579 TMPOP42166 694 aaKnown RBP18.07■□□□□ 0.48
VPS29-201ENST00000360579 RBM26Q5T8P6 1007 aaKnown RBP18.07■□□□□ 0.48
VPS29-201ENST00000360579 DLK2Q6UY11 383 aa18.07■□□□□ 0.48
VPS29-201ENST00000360579 ANKRD13DQ6ZTN6 518 aa18.07■□□□□ 0.48
VPS29-201ENST00000360579 FAM89AQ96GI7 184 aa18.07■□□□□ 0.48
VPS29-201ENST00000360579 TNRC18O15417 2968 aaPredicted RBP18.06■□□□□ 0.48
VPS29-201ENST00000360579 TRPA1O75762 1119 aa18.06■□□□□ 0.48
VPS29-201ENST00000360579 EGFRP00533 1210 aa18.06■□□□□ 0.48
VPS29-201ENST00000360579 HOXB7P09629 217 aa18.06■□□□□ 0.48
VPS29-201ENST00000360579 GPSM2P81274 684 aa18.06■□□□□ 0.48
VPS29-201ENST00000360579 KIF4BQ2VIQ3 1234 aa18.06■□□□□ 0.48
VPS29-201ENST00000360579 ISCA1Q9BUE6 129 aa18.06■□□□□ 0.48
VPS29-201ENST00000360579 ZC3H12CQ9C0D7 883 aaKnown RBP18.06■□□□□ 0.48
VPS29-201ENST00000360579 RNF186Q9NXI6 227 aa18.06■□□□□ 0.48
VPS29-201ENST00000360579 CHPF2Q9P2E5 772 aa18.06■□□□□ 0.48
VPS29-201ENST00000360579 RTL9Q8NET4 1388 aa18.05■□□□□ 0.48
VPS29-201ENST00000360579 CHL1O00533 1208 aa18.05■□□□□ 0.48
VPS29-201ENST00000360579 SLC10A3P09131 477 aa18.05■□□□□ 0.48
VPS29-201ENST00000360579 HSP90B1P14625 803 aaKnown RBP18.05■□□□□ 0.48
VPS29-201ENST00000360579 DOK7Q18PE1 504 aa18.05■□□□□ 0.48
VPS29-201ENST00000360579 HDGFL1Q5TGJ6 251 aa18.05■□□□□ 0.48
VPS29-201ENST00000360579 TBC1D16Q8TBP0 767 aa18.05■□□□□ 0.48
VPS29-201ENST00000360579 GGA3Q9NZ52 723 aa18.05■□□□□ 0.48
VPS29-201ENST00000360579 DBF4Q9UBU7 674 aaPredicted RBP18.05■□□□□ 0.48
VPS29-201ENST00000360579 G3V3G9 751 aa18.04■□□□□ 0.48
VPS29-201ENST00000360579 VIL1P09327 827 aaKnown RBP18.04■□□□□ 0.48
VPS29-201ENST00000360579 RPS8P62241 208 aaKnown RBP18.04■□□□□ 0.48
VPS29-201ENST00000360579 TRIM28Q13263 835 aaKnown RBP18.04■□□□□ 0.48
VPS29-201ENST00000360579 DCAF8Q5TAQ9 597 aa18.04■□□□□ 0.48
VPS29-201ENST00000360579 PODXL2Q9NZ53 605 aa18.04■□□□□ 0.48
VPS29-201ENST00000360579 PDE4DIPQ5VU43 2346 aa18.03■□□□□ 0.48
VPS29-201ENST00000360579 IRS4O14654 1257 aaPredicted RBP18.03■□□□□ 0.48
VPS29-201ENST00000360579 FKBP1BP68106 108 aa18.03■□□□□ 0.48
VPS29-201ENST00000360579 CTU1Q7Z7A3 348 aaKnown RBP18.03■□□□□ 0.48
VPS29-201ENST00000360579 CSRNP1Q96S65 589 aa18.03■□□□□ 0.48
VPS29-201ENST00000360579 KCNQ5Q9NR82 932 aa18.03■□□□□ 0.48
VPS29-201ENST00000360579 HYPKQ9NX55 129 aa18.03■□□□□ 0.48
VPS29-201ENST00000360579 DDX60Q8IY21 1712 aaKnown RBP18.03■□□□□ 0.48
VPS29-201ENST00000360579 ATP5J2-PTCD1G3V325 749 aa18.02■□□□□ 0.48
VPS29-201ENST00000360579 AGBL3Q8NEM8 1001 aa18.02■□□□□ 0.48
VPS29-201ENST00000360579 ZNF428Q96B54 188 aa18.02■□□□□ 0.48
VPS29-201ENST00000360579 CDCA5Q96FF9 252 aa18.02■□□□□ 0.48
VPS29-201ENST00000360579 TAF1P21675 1872 aa18.01■□□□□ 0.47
VPS29-201ENST00000360579 ZNF609O15014 1411 aa18.01■□□□□ 0.47
VPS29-201ENST00000360579 SOX10P56693 466 aa18.01■□□□□ 0.47
VPS29-201ENST00000360579 ZNF280AP59817 542 aaPredicted RBP18.01■□□□□ 0.47
VPS29-201ENST00000360579 KRT24Q2M2I5 525 aa18.01■□□□□ 0.47
VPS29-201ENST00000360579 ANKIB1Q9P2G1 1089 aa18.01■□□□□ 0.47
VPS29-201ENST00000360579 GGA1Q9UJY5 639 aa18.01■□□□□ 0.47
VPS29-201ENST00000360579 LAS1LQ9Y4W2 734 aaKnown RBP18.01■□□□□ 0.47
VPS29-201ENST00000360579 UFL1O94874 794 aa18■□□□□ 0.47
VPS29-201ENST00000360579 RALBP1Q15311 655 aa18■□□□□ 0.47
VPS29-201ENST00000360579 RTL5Q5HYW3 569 aaPredicted RBP18■□□□□ 0.47
VPS29-201ENST00000360579 ZBTB22O15209 634 aa17.99■□□□□ 0.47
VPS29-201ENST00000360579 SCARF1Q14162 830 aa17.99■□□□□ 0.47
VPS29-201ENST00000360579 NEUROD2Q15784 382 aa17.99■□□□□ 0.47
VPS29-201ENST00000360579 ANGEL2Q5VTE6 544 aaKnown RBP17.99■□□□□ 0.47
VPS29-201ENST00000360579 RSBN1LQ6PCB5 846 aaPredicted RBP17.99■□□□□ 0.47
VPS29-201ENST00000360579 RASAL3Q86YV0 1011 aa17.99■□□□□ 0.47
VPS29-201ENST00000360579 ZBTB38Q8NAP3 1195 aaPredicted RBP17.99■□□□□ 0.47
VPS29-201ENST00000360579 PITPNM2Q9BZ72 1349 aa17.98■□□□□ 0.47
VPS29-201ENST00000360579 PKN2Q16513 984 aaKnown RBP17.98■□□□□ 0.47
VPS29-201ENST00000360579 CCDC152Q4G0S7 254 aa17.98■□□□□ 0.47
VPS29-201ENST00000360579 ASTN2O75129 1339 aaPredicted RBP17.98■□□□□ 0.47
VPS29-201ENST00000360579 USP17L8P0C7I0 530 aa17.97■□□□□ 0.47
VPS29-201ENST00000360579 GOLGA2Q08379 1002 aa17.97■□□□□ 0.47
VPS29-201ENST00000360579 PRPF38BQ5VTL8 546 aaKnown RBP17.97■□□□□ 0.47
VPS29-201ENST00000360579 AKAP11Q9UKA4 1901 aa17.97■□□□□ 0.47
VPS29-201ENST00000360579 RIC3Q7Z5B4 369 aa17.96■□□□□ 0.47
VPS29-201ENST00000360579 PODNQ7Z5L7 613 aa17.96■□□□□ 0.47
VPS29-201ENST00000360579 RUNDC1Q96C34 613 aa17.96■□□□□ 0.47
VPS29-201ENST00000360579 MYOZ2Q9NPC6 264 aa17.96■□□□□ 0.47
VPS29-201ENST00000360579 SEC31BQ9NQW1 1179 aa17.96■□□□□ 0.47
VPS29-201ENST00000360579 TRIM35Q9UPQ4 493 aa17.96■□□□□ 0.47
VPS29-201ENST00000360579 POLR2AP24928 1970 aaKnown RBP17.96■□□□□ 0.47
VPS29-201ENST00000360579 XDHP47989 1333 aa17.96■□□□□ 0.46
VPS29-201ENST00000360579 PAPPA2Q9BXP8 1791 aa17.95■□□□□ 0.46
VPS29-201ENST00000360579 DUSP27Q5VZP5 1158 aa17.95■□□□□ 0.46
VPS29-201ENST00000360579 CCDC146Q8IYE0 955 aa17.95■□□□□ 0.46
VPS29-201ENST00000360579 HDAC9Q9UKV0 1011 aa17.95■□□□□ 0.46
VPS29-201ENST00000360579 HPS5Q9UPZ3 1129 aa17.95■□□□□ 0.46
VPS29-201ENST00000360579 COL4A1P02462 1669 aa17.95■□□□□ 0.46
VPS29-201ENST00000360579 USP17L3A6NCW0 530 aa17.94■□□□□ 0.46
VPS29-201ENST00000360579 USP17L4A6NCW7 530 aa17.94■□□□□ 0.46
VPS29-201ENST00000360579 PDE8AO60658 829 aa17.94■□□□□ 0.46
VPS29-201ENST00000360579 USP17L1Q7RTZ2 530 aa17.94■□□□□ 0.46
VPS29-201ENST00000360579 CCDC191Q8NCU4 936 aa17.94■□□□□ 0.46
VPS29-201ENST00000360579 GMLQ99445 158 aa17.94■□□□□ 0.46
VPS29-201ENST00000360579 SCN9AQ15858 1988 aa17.93■□□□□ 0.46
VPS29-201ENST00000360579 PCCAP05165 728 aaPredicted RBP17.93■□□□□ 0.46
VPS29-201ENST00000360579 ATP2B4P23634 1241 aa17.93■□□□□ 0.46
VPS29-201ENST00000360579 NOM1Q5C9Z4 860 aaKnown RBP17.93■□□□□ 0.46
VPS29-201ENST00000360579 ANKRD18AQ8IVF6 992 aa17.93■□□□□ 0.46
VPS29-201ENST00000360579 NF2P35240 595 aa17.92■□□□□ 0.46
VPS29-201ENST00000360579 WDR43Q15061 677 aaKnown RBP eCLIP17.92■□□□□ 0.46
VPS29-201ENST00000360579 MMP14P50281 582 aa17.91■□□□□ 0.46
VPS29-201ENST00000360579 OGFOD1Q8N543 542 aa17.91■□□□□ 0.46
VPS29-201ENST00000360579 ZNF296Q8WUU4 475 aaPredicted RBP17.91■□□□□ 0.46
VPS29-201ENST00000360579 MYD88Q99836 296 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms