RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 BSDC1Q9NW68 430 aaPredicted RBP24.43■■□□□ 1.5
CLN3-205ENST00000359984 TLR7Q9NYK1 1049 aaKnown RBP24.43■■□□□ 1.5
CLN3-205ENST00000359984 ANKRD31Q8N7Z5 1873 aa24.41■■□□□ 1.5
CLN3-205ENST00000359984 ZBTB7AO95365 584 aa24.41■■□□□ 1.5
CLN3-205ENST00000359984 TIMM10P62072 90 aa24.41■■□□□ 1.5
CLN3-205ENST00000359984 GRAPQ13588 217 aa24.41■■□□□ 1.5
CLN3-205ENST00000359984 TTC22Q5TAA0 569 aa24.41■■□□□ 1.5
CLN3-205ENST00000359984 HELBQ8NG08 1087 aaPredicted RBP24.41■■□□□ 1.5
CLN3-205ENST00000359984 GRAPLQ8TC17 118 aaPredicted RBP24.41■■□□□ 1.5
CLN3-205ENST00000359984 PDE8BO95263 885 aa24.4■■□□□ 1.5
CLN3-205ENST00000359984 HOXA10P31260 410 aaPredicted RBP24.4■■□□□ 1.5
CLN3-205ENST00000359984 PDE6BP35913 854 aa24.4■■□□□ 1.5
CLN3-205ENST00000359984 RBM17Q96I25 401 aaKnown RBP24.4■■□□□ 1.5
CLN3-205ENST00000359984 DBNLQ9UJU6 430 aaKnown RBP24.4■■□□□ 1.5
CLN3-205ENST00000359984 AKAP2Q9Y2D5 859 aa24.4■■□□□ 1.5
CLN3-205ENST00000359984 SPEF2Q9C093 1822 aa24.39■■□□□ 1.5
CLN3-205ENST00000359984 AOX1Q06278 1338 aa24.39■■□□□ 1.5
CLN3-205ENST00000359984 ZNF609O15014 1411 aa24.39■■□□□ 1.5
CLN3-205ENST00000359984 GSPT1P15170 499 aaKnown RBP24.39■■□□□ 1.5
CLN3-205ENST00000359984 BMP2KLQ5H9B9 411 aa24.39■■□□□ 1.5
CLN3-205ENST00000359984 A0A1B0GUL7 405 aa24.38■■□□□ 1.49
CLN3-205ENST00000359984 NEUROD6Q96NK8 337 aa24.38■■□□□ 1.49
CLN3-205ENST00000359984 DBNDD2Q9BQY9 259 aa24.38■■□□□ 1.49
CLN3-205ENST00000359984 ECHDC1Q9NTX5 307 aa24.38■■□□□ 1.49
CLN3-205ENST00000359984 TTC41PQ6P2S7 1318 aa24.38■■□□□ 1.49
CLN3-205ENST00000359984 PSDA5PKW4 1024 aaPredicted RBP24.38■■□□□ 1.49
CLN3-205ENST00000359984 CHRNDQ07001 517 aa24.38■■□□□ 1.49
CLN3-205ENST00000359984 PI4K2BQ8TCG2 481 aa24.38■■□□□ 1.49
CLN3-205ENST00000359984 MTFR1LQ9H019 292 aa24.38■■□□□ 1.49
CLN3-205ENST00000359984 MINPP1Q9UNW1 487 aa24.38■■□□□ 1.49
CLN3-205ENST00000359984 SRGNP10124 158 aa24.37■■□□□ 1.49
CLN3-205ENST00000359984 GPATCH3Q96I76 525 aa24.37■■□□□ 1.49
CLN3-205ENST00000359984 CRAMP1Q96RY5 1269 aa24.37■■□□□ 1.49
CLN3-205ENST00000359984 ATF5Q9Y2D1 282 aaPredicted RBP24.37■■□□□ 1.49
CLN3-205ENST00000359984 TAF5LO75529 589 aa24.36■■□□□ 1.49
CLN3-205ENST00000359984 ATP2B3Q16720 1220 aa24.36■■□□□ 1.49
CLN3-205ENST00000359984 NPR1P16066 1061 aa24.36■■□□□ 1.49
CLN3-205ENST00000359984 FGFR2P21802 821 aa24.35■■□□□ 1.49
CLN3-205ENST00000359984 PUM3Q15397 648 aaKnown RBP24.35■■□□□ 1.49
CLN3-205ENST00000359984 ADORA1P30542 326 aa24.34■■□□□ 1.49
CLN3-205ENST00000359984 C2CD5Q86YS7 1000 aa24.34■■□□□ 1.49
CLN3-205ENST00000359984 RBM19Q9Y4C8 960 aaKnown RBP24.34■■□□□ 1.49
CLN3-205ENST00000359984 SNAP23O00161 211 aa24.33■■□□□ 1.49
CLN3-205ENST00000359984 ERC2O15083 957 aa24.33■■□□□ 1.49
CLN3-205ENST00000359984 BBOX1O75936 387 aa24.33■■□□□ 1.49
CLN3-205ENST00000359984 GLRX3O76003 335 aaKnown RBP24.33■■□□□ 1.49
CLN3-205ENST00000359984 LPIN2Q92539 896 aa24.33■■□□□ 1.49
CLN3-205ENST00000359984 XAGE2Q96GT9 111 aa24.33■■□□□ 1.49
CLN3-205ENST00000359984 C10orf71Q711Q0 1435 aa24.32■■□□□ 1.48
CLN3-205ENST00000359984 SDSP20132 328 aa24.32■■□□□ 1.48
CLN3-205ENST00000359984 MASTLQ96GX5 879 aa24.32■■□□□ 1.48
CLN3-205ENST00000359984 C8orf34Q49A92 452 aa24.32■■□□□ 1.48
CLN3-205ENST00000359984 SLC51AQ86UW1 340 aa24.32■■□□□ 1.48
CLN3-205ENST00000359984 COL11A2P13942 1736 aaPredicted RBP24.31■■□□□ 1.48
CLN3-205ENST00000359984 H0YIN7 160 aa24.31■■□□□ 1.48
CLN3-205ENST00000359984 POLD1P28340 1107 aa24.31■■□□□ 1.48
CLN3-205ENST00000359984 ATP5JP18859 108 aa24.3■■□□□ 1.48
CLN3-205ENST00000359984 ANKRD2Q9GZV1 360 aa24.3■■□□□ 1.48
CLN3-205ENST00000359984 WTIPA6NIX2 430 aaPredicted RBP24.3■■□□□ 1.48
CLN3-205ENST00000359984 SLC5A1P13866 664 aa24.3■■□□□ 1.48
CLN3-205ENST00000359984 CHRNA5P30532 468 aa24.3■■□□□ 1.48
CLN3-205ENST00000359984 ALDH1B1P30837 517 aa24.29■■□□□ 1.48
CLN3-205ENST00000359984 GORABQ5T7V8 394 aa24.29■■□□□ 1.48
CLN3-205ENST00000359984 STYK1Q6J9G0 422 aa24.29■■□□□ 1.48
CLN3-205ENST00000359984 ZNF622Q969S3 477 aaKnown RBP eCLIP24.29■■□□□ 1.48
CLN3-205ENST00000359984 BACH2Q9BYV9 841 aa24.29■■□□□ 1.48
CLN3-205ENST00000359984 BOLA2Q9H3K6 86 aa24.29■■□□□ 1.48
CLN3-205ENST00000359984 MAP4K4O95819 1239 aaPredicted RBP24.28■■□□□ 1.48
CLN3-205ENST00000359984 IFIT1P09914 478 aaKnown RBP24.28■■□□□ 1.48
CLN3-205ENST00000359984 UBE4AQ14139 1066 aa24.28■■□□□ 1.48
CLN3-205ENST00000359984 A0A1B0GUL6 1792 aa24.28■■□□□ 1.48
CLN3-205ENST00000359984 CCDC158Q5M9N0 1113 aa24.28■■□□□ 1.48
CLN3-205ENST00000359984 SGIP1Q9BQI5 828 aa24.28■■□□□ 1.48
CLN3-205ENST00000359984 TRIM6-TRIM34B2RNG4 842 aa24.27■■□□□ 1.48
CLN3-205ENST00000359984 PPEF1O14829 653 aaPredicted RBP24.27■■□□□ 1.48
CLN3-205ENST00000359984 TMC4Q7Z404 712 aa24.27■■□□□ 1.48
CLN3-205ENST00000359984 RILPL2Q969X0 211 aa24.26■■□□□ 1.47
CLN3-205ENST00000359984 GPSM2P81274 684 aa24.25■■□□□ 1.47
CLN3-205ENST00000359984 TTC39AQ5SRH9 613 aa24.25■■□□□ 1.47
CLN3-205ENST00000359984 SP8Q8IXZ3 490 aa24.25■■□□□ 1.47
CLN3-205ENST00000359984 ANKIB1Q9P2G1 1089 aa24.25■■□□□ 1.47
CLN3-205ENST00000359984 ATP6V0A2Q9Y487 856 aa24.25■■□□□ 1.47
CLN3-205ENST00000359984 PTGER2P43116 358 aa24.24■■□□□ 1.47
CLN3-205ENST00000359984 PHKA1P46020 1223 aa24.24■■□□□ 1.47
CLN3-205ENST00000359984 KCNJ4P48050 445 aa24.24■■□□□ 1.47
CLN3-205ENST00000359984 CCDC102BQ68D86 513 aa24.24■■□□□ 1.47
CLN3-205ENST00000359984 HAUS7Q99871 368 aa24.24■■□□□ 1.47
CLN3-205ENST00000359984 XDHP47989 1333 aa24.24■■□□□ 1.47
CLN3-205ENST00000359984 ARAP2Q8WZ64 1704 aa24.24■■□□□ 1.47
CLN3-205ENST00000359984 ZNF804BA4D1E1 1349 aa24.23■■□□□ 1.47
CLN3-205ENST00000359984 CDC45O75419 566 aa24.23■■□□□ 1.47
CLN3-205ENST00000359984 CNTROBQ8N137 903 aa24.23■■□□□ 1.47
CLN3-205ENST00000359984 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.23■■□□□ 1.47
CLN3-205ENST00000359984 CNKSR1Q969H4 720 aa24.23■■□□□ 1.47
CLN3-205ENST00000359984 LEMD3Q9Y2U8 911 aa24.23■■□□□ 1.47
CLN3-205ENST00000359984 BCAMP50895 628 aa24.22■■□□□ 1.47
CLN3-205ENST00000359984 ZNF512BQ96KM6 892 aaPredicted RBP24.22■■□□□ 1.47
CLN3-205ENST00000359984 NSFL1CQ9UNZ2 370 aaKnown RBP24.22■■□□□ 1.47
CLN3-205ENST00000359984 NDUFB9Q9Y6M9 179 aa24.22■■□□□ 1.47
CLN3-205ENST00000359984 SCARF1Q14162 830 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms