RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.1□□□□□ -0.63
CHD3-202ENST00000358181 FAM47CQ5HY64 1035 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 TSHZ3Q63HK5 1081 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 EXOC1Q9NV70 894 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 CCDC170Q8IYT3 715 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 VPS52Q8N1B4 723 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 TCP11L1Q9NUJ3 509 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 HYPKQ9NX55 129 aa11.1□□□□□ -0.63
CHD3-202ENST00000358181 BRD4O60885 1362 aaPredicted RBP11.09□□□□□ -0.63
CHD3-202ENST00000358181 SORBS3O60504 671 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 HSPA1LP34931 641 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 IFIT5Q13325 482 aaKnown RBP11.09□□□□□ -0.63
CHD3-202ENST00000358181 ZHX1Q9UKY1 873 aaPredicted RBP11.09□□□□□ -0.63
CHD3-202ENST00000358181 ZNF213O14771 459 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 FNBP4Q8N3X1 1017 aaPredicted RBP11.09□□□□□ -0.63
CHD3-202ENST00000358181 AKAP2Q9Y2D5 859 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 DUSP27Q5VZP5 1158 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 TBC1D31Q96DN5 1066 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 JAG2Q9Y219 1238 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 ANXA1P04083 346 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 RFC1P35251 1148 aaPredicted RBP11.09□□□□□ -0.63
CHD3-202ENST00000358181 PPARDQ03181 441 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 HSP90AA4PQ58FG1 418 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 NAA15Q9BXJ9 866 aaKnown RBP11.09□□□□□ -0.63
CHD3-202ENST00000358181 ZBTB3Q9H5J0 574 aa11.09□□□□□ -0.63
CHD3-202ENST00000358181 TTC12Q9H892 705 aaPredicted RBP11.09□□□□□ -0.63
CHD3-202ENST00000358181 ESYT2A0FGR8 921 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 KCNK9Q9NPC2 374 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 ATP5J2-PTCD1G3V325 749 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 AMPD3Q01432 767 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 SKIV2LQ15477 1246 aaKnown RBP11.08□□□□□ -0.64
CHD3-202ENST00000358181 TMTC4Q5T4D3 741 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 SEC62Q99442 399 aaKnown RBP11.08□□□□□ -0.64
CHD3-202ENST00000358181 RPGRIP1LQ68CZ1 1315 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 KIF3CO14782 793 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 HSF2BPO75031 334 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 CHD1LQ86WJ1 897 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 PDCD7Q8N8D1 485 aaKnown RBP11.08□□□□□ -0.64
CHD3-202ENST00000358181 WDR48Q8TAF3 677 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 JDP2Q8WYK2 163 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 STX8Q9UNK0 236 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 ZNF692Q9BU19 519 aaPredicted RBP11.08□□□□□ -0.64
CHD3-202ENST00000358181 MBD3O95983 291 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 CCT4P50991 539 aaKnown RBP11.08□□□□□ -0.64
CHD3-202ENST00000358181 C20orf194Q5TEA3 1177 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 NBPF6Q5VWK0 638 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 NBPF5PQ86XG9 351 aaPredicted RBP11.08□□□□□ -0.64
CHD3-202ENST00000358181 NBPF4Q96M43 638 aa11.08□□□□□ -0.64
CHD3-202ENST00000358181 ATRIPQ8WXE1 791 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 FAM83GA6ND36 823 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 HAND2P61296 217 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 GPR162Q16538 588 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 NBPF14Q5TI25 921 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 C8orf76Q96K31 380 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 TRIM7Q9C029 511 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 MRC2Q9UBG0 1479 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 IFNLR1Q8IU57 520 aaPredicted RBP11.07□□□□□ -0.64
CHD3-202ENST00000358181 PRPF40BQ6NWY9 871 aaKnown RBP11.07□□□□□ -0.64
CHD3-202ENST00000358181 BAG1Q99933 345 aaPredicted RBP11.07□□□□□ -0.64
CHD3-202ENST00000358181 BAG3O95817 575 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 MRE11P49959 708 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 WDR33Q9C0J8 1336 aaKnown RBP11.07□□□□□ -0.64
CHD3-202ENST00000358181 GIPC1O14908 333 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 TMPOP42166 694 aaKnown RBP11.07□□□□□ -0.64
CHD3-202ENST00000358181 CKAP4Q07065 602 aaKnown RBP11.07□□□□□ -0.64
CHD3-202ENST00000358181 GBP7Q8N8V2 638 aaPredicted RBP11.07□□□□□ -0.64
CHD3-202ENST00000358181 TFCP2L1Q9NZI6 479 aa11.07□□□□□ -0.64
CHD3-202ENST00000358181 WDR97A6NE52 1622 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 FMNL3Q8IVF7 1028 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 PDCL2Q8N4E4 241 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 GBP3Q9H0R5 595 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 PARP3Q9Y6F1 533 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 CCDC172P0C7W6 258 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 PTGS1P23219 599 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 SLC8A3P57103 927 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 MVPQ14764 893 aaKnown RBP11.06□□□□□ -0.64
CHD3-202ENST00000358181 ZYXQ15942 572 aaKnown RBP11.06□□□□□ -0.64
CHD3-202ENST00000358181 FAM114A1Q8IWE2 563 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 KIAA1107Q9UPP5 1409 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 OPA1O60313 960 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 GTF2F1P35269 517 aaKnown RBP eCLIP11.06□□□□□ -0.64
CHD3-202ENST00000358181 AFMP43652 599 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 AMOTL2Q9Y2J4 779 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 PDE4BQ07343 736 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 ITKQ08881 620 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 KIAA1524Q8TCG1 905 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 NCAPGQ9BPX3 1015 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 OATP04181 439 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 TMEM67Q5HYA8 995 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 TRIM47Q96LD4 638 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 SNRKQ9NRH2 765 aa11.06□□□□□ -0.64
CHD3-202ENST00000358181 OLA1Q9NTK5 396 aaKnown RBP11.06□□□□□ -0.64
CHD3-202ENST00000358181 PDE6AP16499 860 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 IL1RL1Q01638 556 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 SMARCC1Q92922 1105 aaPredicted RBP11.05□□□□□ -0.64
CHD3-202ENST00000358181 SLC26A6Q9BXS9 759 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 PHAXQ9H814 394 aaKnown RBP11.05□□□□□ -0.64
CHD3-202ENST00000358181 CLIP2Q9UDT6 1046 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 MAN1A1P33908 653 aa11.05□□□□□ -0.64
CHD3-202ENST00000358181 MAEAQ7L5Y9 396 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms