RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 DPEP1P16444 411 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 MMP14P50281 582 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 PPP4R3BQ5MIZ7 849 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 NBPF10Q6P3W6 841 aaKnown RBP11.11□□□□□ -0.63
UPF2-202ENST00000357604 TRMT2AQ8IZ69 625 aaKnown RBP11.11□□□□□ -0.63
UPF2-202ENST00000357604 NBPF15Q8N660 670 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 FKBP4Q02790 459 aaKnown RBP eCLIP11.11□□□□□ -0.63
UPF2-202ENST00000357604 RNF20Q5VTR2 975 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 TOMM22Q9NS69 142 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 GTF3C3Q9Y5Q9 886 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 ZSCAN29Q8IWY8 852 aaPredicted RBP11.1□□□□□ -0.63
UPF2-202ENST00000357604 SUCLG2Q96I99 432 aa11.1□□□□□ -0.63
UPF2-202ENST00000357604 H7C1W4 665 aa11.1□□□□□ -0.63
UPF2-202ENST00000357604 HLA-DOAP06340 250 aa11.1□□□□□ -0.63
UPF2-202ENST00000357604 HSP90AA1P07900 732 aaKnown RBP11.1□□□□□ -0.63
UPF2-202ENST00000357604 POLRMTO00411 1230 aaKnown RBP11.1□□□□□ -0.63
UPF2-202ENST00000357604 TRDNQ13061 729 aa11.1□□□□□ -0.63
UPF2-202ENST00000357604 UBE4AQ14139 1066 aa11.1□□□□□ -0.63
UPF2-202ENST00000357604 RNF181Q9P0P0 153 aa11.1□□□□□ -0.63
UPF2-202ENST00000357604 ERICH2A1L162 156 aa11.1□□□□□ -0.63
UPF2-202ENST00000357604 SYNE4Q8N205 404 aa11.1□□□□□ -0.63
UPF2-202ENST00000357604 USP5P45974 858 aa11.09□□□□□ -0.63
UPF2-202ENST00000357604 PAXIP1Q6ZW49 1069 aaPredicted RBP11.09□□□□□ -0.63
UPF2-202ENST00000357604 LRRC4BQ9NT99 713 aa11.09□□□□□ -0.63
UPF2-202ENST00000357604 GLRX3O76003 335 aaKnown RBP11.09□□□□□ -0.63
UPF2-202ENST00000357604 CCDC24Q8N4L8 307 aa11.09□□□□□ -0.63
UPF2-202ENST00000357604 PRPF40BQ6NWY9 871 aaKnown RBP11.09□□□□□ -0.63
UPF2-202ENST00000357604 ANKRD44Q8N8A2 993 aa11.09□□□□□ -0.63
UPF2-202ENST00000357604 ABCF2Q9UG63 623 aa11.09□□□□□ -0.63
UPF2-202ENST00000357604 LDHBP07195 334 aaKnown RBP11.09□□□□□ -0.63
UPF2-202ENST00000357604 TNFAIP1Q13829 316 aa11.09□□□□□ -0.63
UPF2-202ENST00000357604 DCPSQ96C86 337 aaKnown RBP11.09□□□□□ -0.63
UPF2-202ENST00000357604 MEIS3Q99687 375 aa11.09□□□□□ -0.63
UPF2-202ENST00000357604 ZNF804BA4D1E1 1349 aa11.09□□□□□ -0.63
UPF2-202ENST00000357604 RGPD2P0DJD1 1756 aa11.09□□□□□ -0.63
UPF2-202ENST00000357604 C21orf2O43822 256 aa11.08□□□□□ -0.63
UPF2-202ENST00000357604 CIAPIN1Q6FI81 312 aa11.08□□□□□ -0.63
UPF2-202ENST00000357604 WWC3Q9ULE0 1092 aa11.08□□□□□ -0.63
UPF2-202ENST00000357604 SYNE3Q6ZMZ3 975 aa11.08□□□□□ -0.64
UPF2-202ENST00000357604 AIDAQ96BJ3 306 aa11.08□□□□□ -0.64
UPF2-202ENST00000357604 COA1Q9GZY4 146 aa11.08□□□□□ -0.64
UPF2-202ENST00000357604 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.08□□□□□ -0.64
UPF2-202ENST00000357604 A0A0G2JLW4 131 aa11.08□□□□□ -0.64
UPF2-202ENST00000357604 NTSR2O95665 410 aa11.08□□□□□ -0.64
UPF2-202ENST00000357604 LMNB1P20700 586 aa11.08□□□□□ -0.64
UPF2-202ENST00000357604 FAM161AQ3B820 660 aa11.08□□□□□ -0.64
UPF2-202ENST00000357604 SF3B3Q15393 1217 aaKnown RBP11.08□□□□□ -0.64
UPF2-202ENST00000357604 TMED8Q6PL24 325 aaPredicted RBP11.08□□□□□ -0.64
UPF2-202ENST00000357604 CRACR2BQ8N4Y2 399 aaPredicted RBP11.08□□□□□ -0.64
UPF2-202ENST00000357604 CHRNDQ07001 517 aa11.07□□□□□ -0.64
UPF2-202ENST00000357604 SLC10A5Q5PT55 438 aa11.07□□□□□ -0.64
UPF2-202ENST00000357604 FHDC1Q9C0D6 1143 aaPredicted RBP11.07□□□□□ -0.64
UPF2-202ENST00000357604 CRNKL1Q9BZJ0 848 aaKnown RBP11.07□□□□□ -0.64
UPF2-202ENST00000357604 IDH1O75874 414 aaKnown RBP11.07□□□□□ -0.64
UPF2-202ENST00000357604 ZFYP08048 801 aaPredicted RBP11.07□□□□□ -0.64
UPF2-202ENST00000357604 IARSP41252 1262 aaKnown RBP11.07□□□□□ -0.64
UPF2-202ENST00000357604 ILDR2Q71H61 639 aa11.07□□□□□ -0.64
UPF2-202ENST00000357604 EAPPQ56P03 285 aaPredicted RBP11.07□□□□□ -0.64
UPF2-202ENST00000357604 CTNNA3Q9UI47 895 aa11.07□□□□□ -0.64
UPF2-202ENST00000357604 ATP6V0A2Q9Y487 856 aa11.06□□□□□ -0.64
UPF2-202ENST00000357604 REC8O95072 547 aa11.06□□□□□ -0.64
UPF2-202ENST00000357604 SPINK5Q9NQ38 1064 aaPredicted RBP11.06□□□□□ -0.64
UPF2-202ENST00000357604 GPR108Q9NPR9 543 aa11.06□□□□□ -0.64
UPF2-202ENST00000357604 C4BP0C0L5 1744 aa11.06□□□□□ -0.64
UPF2-202ENST00000357604 GREM2Q9H772 168 aa11.06□□□□□ -0.64
UPF2-202ENST00000357604 KCPQ6ZWJ8 1503 aa11.06□□□□□ -0.64
UPF2-202ENST00000357604 POLR3DP05423 398 aaPredicted RBP11.05□□□□□ -0.64
UPF2-202ENST00000357604 MX1P20591 662 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 SART3Q15020 963 aaKnown RBP11.05□□□□□ -0.64
UPF2-202ENST00000357604 SCN11AQ9UI33 1791 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 TTC41PQ6P2S7 1318 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 CHRNA5P30532 468 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 TFCP2Q12800 502 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 CHD1LQ86WJ1 897 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 RHPN1Q8TCX5 695 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 NAP1L2Q9ULW6 460 aaPredicted RBP11.05□□□□□ -0.64
UPF2-202ENST00000357604 ZKSCAN1P17029 563 aaPredicted RBP11.05□□□□□ -0.64
UPF2-202ENST00000357604 DLGAP5Q15398 846 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 CCAR1Q8IX12 1150 aaKnown RBP11.05□□□□□ -0.64
UPF2-202ENST00000357604 BTAF1O14981 1849 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 CEP85Q6P2H3 762 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 ECHDC1Q9NTX5 307 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 C5P01031 1676 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 USP17L3A6NCW0 530 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 USP17L4A6NCW7 530 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 GNAT2P19087 354 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 TM4SF1P30408 202 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 USP17L1Q7RTZ2 530 aa11.05□□□□□ -0.64
UPF2-202ENST00000357604 IGSF3O75054 1194 aa11.04□□□□□ -0.64
UPF2-202ENST00000357604 HDAC1Q13547 482 aaPredicted RBP11.04□□□□□ -0.64
UPF2-202ENST00000357604 EVI5LQ96CN4 794 aa11.04□□□□□ -0.64
UPF2-202ENST00000357604 EXOC6BQ9Y2D4 811 aa11.04□□□□□ -0.64
UPF2-202ENST00000357604 NAA16Q6N069 864 aaPredicted RBP11.04□□□□□ -0.64
UPF2-202ENST00000357604 CDC45O75419 566 aa11.04□□□□□ -0.64
UPF2-202ENST00000357604 RPS12P25398 132 aaKnown RBP11.04□□□□□ -0.64
UPF2-202ENST00000357604 ANP32AP39687 249 aaKnown RBP11.04□□□□□ -0.64
UPF2-202ENST00000357604 BECN1Q14457 450 aa11.04□□□□□ -0.64
UPF2-202ENST00000357604 PDIA6Q15084 440 aa11.04□□□□□ -0.64
UPF2-202ENST00000357604 CABP5Q9NP86 173 aa11.04□□□□□ -0.64
UPF2-202ENST00000357604 CCDC178Q5BJE1 867 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms