RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 GNG11P61952 73 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 CEP128Q6ZU80 1094 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 UBASH3AP57075 661 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 ZNF354CQ86Y25 554 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 ANKS4BQ8N8V4 417 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 KLF18A0A0U1RQI7 1052 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 BIN1O00499 593 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 KLHL40Q2TBA0 621 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 CADPS2Q86UW7 1296 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 OGFOD1Q8N543 542 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 JAKMIP2Q96AA8 810 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 SMC6Q96SB8 1091 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 ARHGEF11O15085 1522 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 PPP1R2P41236 205 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 MAP3K9P80192 1104 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 LRSAM1Q6UWE0 723 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 CCDC129Q6ZRS4 1044 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 TBC1D9Q6ZT07 1266 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 MRPS27Q92552 414 aaKnown RBP7.35□□□□□ -1.23
UPF2-201ENST00000356352 ALG1Q9BT22 464 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 CEP83Q9Y592 693 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 EMILIN1Q9Y6C2 1016 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 SLC4A4Q9Y6R1 1079 aa7.35□□□□□ -1.23
UPF2-201ENST00000356352 TRIM27P14373 513 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 ALDH3A1P30838 453 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 IL15P40933 162 aaPredicted RBP7.34□□□□□ -1.23
UPF2-201ENST00000356352 CCDC144CPQ8IYA2 1237 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 RRP36Q96EU6 259 aaKnown RBP7.34□□□□□ -1.23
UPF2-201ENST00000356352 FAM13AO94988 1023 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 CYP7A1P22680 504 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 MXRA7P84157 204 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 ANKRD13DQ6ZTN6 518 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 SETDB2Q96T68 719 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 MRVI1Q9Y6F6 885 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 DYNC1I1O14576 645 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 NAPAP54920 295 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 MCMDC2Q4G0Z9 681 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 UBE3BQ7Z3V4 1068 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 HEATR3Q7Z4Q2 680 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 CCDC117Q8IWD4 279 aaPredicted RBP7.34□□□□□ -1.23
UPF2-201ENST00000356352 MSH6P52701 1360 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 SPDYE3A6NKU9 549 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 CBX1P83916 185 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 DAAM2Q86T65 1068 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 OTUD6BQ8N6M0 293 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 TSGA10Q9BZW7 698 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 ZNF219Q9P2Y4 722 aaPredicted RBP7.34□□□□□ -1.23
UPF2-201ENST00000356352 STX8Q9UNK0 236 aa7.34□□□□□ -1.23
UPF2-201ENST00000356352 WDR97A6NE52 1622 aa7.34□□□□□ -1.24
UPF2-201ENST00000356352 CDK13Q14004 1512 aaKnown RBP7.33□□□□□ -1.24
UPF2-201ENST00000356352 KRT86O43790 486 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 TUBBP07437 444 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 ATP2B3Q16720 1220 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 MAP7D1Q3KQU3 841 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 KRT79Q5XKE5 535 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 NAA16Q6N069 864 aaPredicted RBP7.33□□□□□ -1.24
UPF2-201ENST00000356352 TBC1D2Q9BYX2 928 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 MMRN2Q9H8L6 949 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 STK24Q9Y6E0 443 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 ABCC5O15440 1437 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 GAS8O95995 478 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 ASIC1P78348 528 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 HDAC1Q13547 482 aaPredicted RBP7.33□□□□□ -1.24
UPF2-201ENST00000356352 CCDC6Q16204 474 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 GSTA5Q7RTV2 222 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 RHPN1Q8TCX5 695 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 NLRP3Q96P20 1036 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 PSMD1Q99460 953 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 SH2D4AQ9H788 454 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 RBM28Q9NW13 759 aaKnown RBP7.33□□□□□ -1.24
UPF2-201ENST00000356352 DENND4BO75064 1496 aaPredicted RBP7.33□□□□□ -1.24
UPF2-201ENST00000356352 CA8P35219 290 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 KRT2P35908 639 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 SNX16P57768 344 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 HAND2P61296 217 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 ANKRD2Q9GZV1 360 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 MAGEB6P1A0A0J9YX57 407 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 CTAGE9A4FU28 777 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 HS2ST1Q7LGA3 356 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 RGS22Q8NE09 1264 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 EYA3Q99504 573 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 TMX1Q9H3N1 280 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 MBIPQ9NS73 344 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 TFIP11Q9UBB9 837 aaKnown RBP7.33□□□□□ -1.24
UPF2-201ENST00000356352 GNA11P29992 359 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 ARL1P40616 181 aaPredicted RBP7.33□□□□□ -1.24
UPF2-201ENST00000356352 MSL1Q68DK7 614 aa7.33□□□□□ -1.24
UPF2-201ENST00000356352 TTC41PQ6P2S7 1318 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 PI4KAP2A4QPH2 592 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 NOL3O60936 208 aaKnown RBP7.32□□□□□ -1.24
UPF2-201ENST00000356352 ZWINTO95229 277 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 GTF2F1P35269 517 aaKnown RBP eCLIP7.32□□□□□ -1.24
UPF2-201ENST00000356352 PI4KAP1Q8N8J0 262 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 ARFGAP3Q9NP61 516 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 TXNDC16Q9P2K2 825 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 MTRF1LQ9UGC7 380 aaKnown RBP7.32□□□□□ -1.24
UPF2-201ENST00000356352 TRIM75PA6NK02 468 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 FOXO3O43524 673 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 KIF5AQ12840 1032 aa7.32□□□□□ -1.24
UPF2-201ENST00000356352 FAM200AQ8TCP9 573 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms