RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 GPR162Q16538 588 aa9.75□□□□□ -0.85
VPS13A-201ENST00000355766 NLRP13Q86W25 1043 aa9.75□□□□□ -0.85
VPS13A-201ENST00000355766 GPR161Q8N6U8 529 aaKnown RBP9.75□□□□□ -0.85
VPS13A-201ENST00000355766 SIN3AQ96ST3 1273 aa9.75□□□□□ -0.85
VPS13A-201ENST00000355766 ZNF395Q9H8N7 513 aaPredicted RBP9.75□□□□□ -0.85
VPS13A-201ENST00000355766 TNS2Q63HR2 1409 aa9.74□□□□□ -0.85
VPS13A-201ENST00000355766 TOM1L2Q6ZVM7 507 aa9.74□□□□□ -0.85
VPS13A-201ENST00000355766 CCDC155Q8N6L0 562 aa9.74□□□□□ -0.85
VPS13A-201ENST00000355766 CDCA7Q9BWT1 371 aaPredicted RBP9.74□□□□□ -0.85
VPS13A-201ENST00000355766 WDR17Q8IZU2 1322 aa9.74□□□□□ -0.85
VPS13A-201ENST00000355766 BRD4O60885 1362 aaPredicted RBP9.74□□□□□ -0.85
VPS13A-201ENST00000355766 CPSF1Q10570 1443 aaKnown RBP9.73□□□□□ -0.85
VPS13A-201ENST00000355766 KDF1Q8NAX2 398 aaPredicted RBP9.73□□□□□ -0.85
VPS13A-201ENST00000355766 CDK19Q9BWU1 502 aa9.73□□□□□ -0.85
VPS13A-201ENST00000355766 POLMQ9NP87 494 aaPredicted RBP9.73□□□□□ -0.85
VPS13A-201ENST00000355766 ABCC6O95255 1503 aa9.72□□□□□ -0.85
VPS13A-201ENST00000355766 TRPM1Q7Z4N2 1603 aa9.72□□□□□ -0.85
VPS13A-201ENST00000355766 ZBTB7CA1YPR0 619 aa9.72□□□□□ -0.85
VPS13A-201ENST00000355766 SLC35F4A4IF30 521 aa9.72□□□□□ -0.85
VPS13A-201ENST00000355766 ADH1AP07327 375 aa9.72□□□□□ -0.85
VPS13A-201ENST00000355766 KRT76Q01546 638 aa9.72□□□□□ -0.85
VPS13A-201ENST00000355766 NEUROD1Q13562 356 aa9.72□□□□□ -0.85
VPS13A-201ENST00000355766 COL18A1P39060 1754 aa9.72□□□□□ -0.85
VPS13A-201ENST00000355766 PPIP5K1Q6PFW1 1433 aa9.72□□□□□ -0.85
VPS13A-201ENST00000355766 ZBBXA8MT70 800 aa9.71□□□□□ -0.86
VPS13A-201ENST00000355766 BRPF1P55201 1214 aaPredicted RBP9.71□□□□□ -0.86
VPS13A-201ENST00000355766 ZNF827Q17R98 1081 aa9.71□□□□□ -0.86
VPS13A-201ENST00000355766 RNF217Q8TC41 542 aa9.71□□□□□ -0.86
VPS13A-201ENST00000355766 GOLGB1Q14789 3259 aaKnown RBP9.71□□□□□ -0.86
VPS13A-201ENST00000355766 USP6P35125 1406 aa9.71□□□□□ -0.86
VPS13A-201ENST00000355766 ATP10DQ9P241 1426 aa9.71□□□□□ -0.86
VPS13A-201ENST00000355766 COL24A1Q17RW2 1714 aa9.7□□□□□ -0.86
VPS13A-201ENST00000355766 FBXO45P0C2W1 286 aa9.7□□□□□ -0.86
VPS13A-201ENST00000355766 PTGIRP43119 386 aa9.7□□□□□ -0.86
VPS13A-201ENST00000355766 NANOS1Q8WY41 292 aaKnown RBP9.7□□□□□ -0.86
VPS13A-201ENST00000355766 PIK3C2AO00443 1686 aa9.7□□□□□ -0.86
VPS13A-201ENST00000355766 QSER1Q2KHR3 1735 aa9.69□□□□□ -0.86
VPS13A-201ENST00000355766 CCDC7Q96M83 1385 aa9.69□□□□□ -0.86
VPS13A-201ENST00000355766 CYLDQ9NQC7 956 aa9.69□□□□□ -0.86
VPS13A-201ENST00000355766 PCDHB9Q9Y5E1 797 aa9.69□□□□□ -0.86
VPS13A-201ENST00000355766 QRICH2Q9H0J4 1663 aa9.68□□□□□ -0.86
VPS13A-201ENST00000355766 ADCY9O60503 1353 aa9.68□□□□□ -0.86
VPS13A-201ENST00000355766 HSPA6P17066 643 aa9.68□□□□□ -0.86
VPS13A-201ENST00000355766 POLD1P28340 1107 aa9.68□□□□□ -0.86
VPS13A-201ENST00000355766 FOXD4L5Q5VV16 416 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-201ENST00000355766 NLGN2Q8NFZ4 835 aa9.68□□□□□ -0.86
VPS13A-201ENST00000355766 DCAF11Q8TEB1 546 aa9.68□□□□□ -0.86
VPS13A-201ENST00000355766 L3MBTL2Q969R5 705 aa9.68□□□□□ -0.86
VPS13A-201ENST00000355766 CNTNAP3BQ96NU0 1288 aa9.68□□□□□ -0.86
VPS13A-201ENST00000355766 CARD10Q9BWT7 1032 aa9.68□□□□□ -0.86
VPS13A-201ENST00000355766 CNTNAP3Q9BZ76 1288 aa9.68□□□□□ -0.86
VPS13A-201ENST00000355766 EXOC5O00471 708 aa9.67□□□□□ -0.86
VPS13A-201ENST00000355766 YBX3P16989 372 aaKnown RBP eCLIP9.67□□□□□ -0.86
VPS13A-201ENST00000355766 ITGA6P23229 1130 aa9.67□□□□□ -0.86
VPS13A-201ENST00000355766 VWA5B2Q8N398 1253 aa9.67□□□□□ -0.86
VPS13A-201ENST00000355766 COL25A1Q9BXS0 654 aaPredicted RBP9.67□□□□□ -0.86
VPS13A-201ENST00000355766 PNPLA7Q6ZV29 1317 aa9.66□□□□□ -0.86
VPS13A-201ENST00000355766 GRIN3BO60391 1043 aa9.66□□□□□ -0.86
VPS13A-201ENST00000355766 CSB-PGBD3P0DP91 1061 aa9.66□□□□□ -0.86
VPS13A-201ENST00000355766 ACSBG1Q96GR2 724 aa9.66□□□□□ -0.86
VPS13A-201ENST00000355766 LRRC4BQ9NT99 713 aa9.66□□□□□ -0.86
VPS13A-201ENST00000355766 NFAT5O94916 1531 aa9.66□□□□□ -0.86
VPS13A-201ENST00000355766 BTAF1O14981 1849 aa9.66□□□□□ -0.86
VPS13A-201ENST00000355766 SRPK2P78362 688 aaKnown RBP9.65□□□□□ -0.86
VPS13A-201ENST00000355766 RNFT1Q5M7Z0 435 aa9.65□□□□□ -0.86
VPS13A-201ENST00000355766 ARHGEF25Q86VW2 580 aa9.65□□□□□ -0.86
VPS13A-201ENST00000355766 BANK1Q8NDB2 785 aa9.64□□□□□ -0.87
VPS13A-201ENST00000355766 KIAA1210Q9ULL0 1709 aa9.64□□□□□ -0.87
VPS13A-201ENST00000355766 CDC14CA4D256 554 aa9.63□□□□□ -0.87
VPS13A-201ENST00000355766 NR1H3Q13133 447 aa9.63□□□□□ -0.87
VPS13A-201ENST00000355766 SLC27A3Q5K4L6 730 aa9.63□□□□□ -0.87
VPS13A-201ENST00000355766 SV2AQ7L0J3 742 aa9.63□□□□□ -0.87
VPS13A-201ENST00000355766 LYSMD3Q7Z3D4 306 aa9.63□□□□□ -0.87
VPS13A-201ENST00000355766 KCNH5Q8NCM2 988 aa9.63□□□□□ -0.87
VPS13A-201ENST00000355766 TUBGCP6Q96RT7 1819 aa9.63□□□□□ -0.87
VPS13A-201ENST00000355766 GPR37L1O60883 481 aa9.62□□□□□ -0.87
VPS13A-201ENST00000355766 DIEXFQ68CQ4 756 aaKnown RBP9.62□□□□□ -0.87
VPS13A-201ENST00000355766 MTMR14Q8NCE2 650 aa9.62□□□□□ -0.87
VPS13A-201ENST00000355766 CENPJQ9HC77 1338 aaPredicted RBP9.61□□□□□ -0.87
VPS13A-201ENST00000355766 RGPD5Q99666 1765 aa9.61□□□□□ -0.87
VPS13A-201ENST00000355766 ATP5J2-PTCD1G3V325 749 aa9.61□□□□□ -0.87
VPS13A-201ENST00000355766 RNF144AP50876 292 aaPredicted RBP9.61□□□□□ -0.87
VPS13A-201ENST00000355766 EIF4G2P78344 907 aaKnown RBP eCLIP9.61□□□□□ -0.87
VPS13A-201ENST00000355766 PRICKLE2Q7Z3G6 844 aa9.61□□□□□ -0.87
VPS13A-201ENST00000355766 SNRKQ9NRH2 765 aa9.61□□□□□ -0.87
VPS13A-201ENST00000355766 CABP1Q9NZU7 370 aa9.61□□□□□ -0.87
VPS13A-201ENST00000355766 IL2RBP14784 551 aa9.6□□□□□ -0.87
VPS13A-201ENST00000355766 ERVK-9P63128 1117 aa9.6□□□□□ -0.87
VPS13A-201ENST00000355766 ZNF526Q8TF50 670 aaPredicted RBP9.6□□□□□ -0.87
VPS13A-201ENST00000355766 TFCP2L1Q9NZI6 479 aa9.6□□□□□ -0.87
VPS13A-201ENST00000355766 TTC21BQ7Z4L5 1316 aa9.59□□□□□ -0.87
VPS13A-201ENST00000355766 TTC21AQ8NDW8 1320 aa9.59□□□□□ -0.87
VPS13A-201ENST00000355766 A0A1W2PRU2 124 aa9.59□□□□□ -0.87
VPS13A-201ENST00000355766 RHOQP17081 205 aa9.59□□□□□ -0.87
VPS13A-201ENST00000355766 MCCD1P59942 119 aaPredicted RBP9.59□□□□□ -0.87
VPS13A-201ENST00000355766 RNF20Q5VTR2 975 aa9.59□□□□□ -0.87
VPS13A-201ENST00000355766 CC2D2BQ6DHV5 1058 aa9.59□□□□□ -0.87
VPS13A-201ENST00000355766 CUEDC1Q9NWM3 386 aaPredicted RBP9.59□□□□□ -0.87
VPS13A-201ENST00000355766 USP54Q70EL1 1684 aa9.58□□□□□ -0.88
VPS13A-201ENST00000355766 MEN1O00255 615 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms