RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ECE2O60344 883 aa14.72□□□□□ -0.05
RTN3-204ENST00000354497 HSP90AB3PQ58FF7 597 aa14.72□□□□□ -0.05
RTN3-204ENST00000354497 NLRP10Q86W26 655 aa14.72□□□□□ -0.05
RTN3-204ENST00000354497 RASAL3Q86YV0 1011 aa14.72□□□□□ -0.05
RTN3-204ENST00000354497 NECTIN2Q92692 538 aa14.72□□□□□ -0.05
RTN3-204ENST00000354497 LAMB2P55268 1798 aa14.72□□□□□ -0.05
RTN3-204ENST00000354497 PDE4DIPQ5VU43 2346 aa14.72□□□□□ -0.05
RTN3-204ENST00000354497 ASTN2O75129 1339 aaPredicted RBP14.71□□□□□ -0.05
RTN3-204ENST00000354497 SH3TC1Q8TE82 1336 aa14.71□□□□□ -0.05
RTN3-204ENST00000354497 RPS12P25398 132 aaKnown RBP14.71□□□□□ -0.05
RTN3-204ENST00000354497 PROSER3Q2NL68 480 aa14.71□□□□□ -0.05
RTN3-204ENST00000354497 TMC4Q7Z404 712 aa14.71□□□□□ -0.05
RTN3-204ENST00000354497 KCNQ5Q9NR82 932 aa14.71□□□□□ -0.05
RTN3-204ENST00000354497 TSPYL4Q9UJ04 414 aa14.71□□□□□ -0.05
RTN3-204ENST00000354497 G3V3G9 751 aa14.7□□□□□ -0.06
RTN3-204ENST00000354497 DCAF8Q5TAQ9 597 aa14.7□□□□□ -0.06
RTN3-204ENST00000354497 EYA3Q99504 573 aa14.7□□□□□ -0.06
RTN3-204ENST00000354497 AKAP11Q9UKA4 1901 aa14.7□□□□□ -0.06
RTN3-204ENST00000354497 RTL9Q8NET4 1388 aa14.69□□□□□ -0.06
RTN3-204ENST00000354497 TBC1D8O95759 1140 aa14.69□□□□□ -0.06
RTN3-204ENST00000354497 GPSM2P81274 684 aa14.69□□□□□ -0.06
RTN3-204ENST00000354497 PDIA6Q15084 440 aa14.69□□□□□ -0.06
RTN3-204ENST00000354497 COPS6Q7L5N1 327 aa14.69□□□□□ -0.06
RTN3-204ENST00000354497 REM2Q8IYK8 340 aaPredicted RBP14.69□□□□□ -0.06
RTN3-204ENST00000354497 XAGE3Q8WTP9 111 aa14.69□□□□□ -0.06
RTN3-204ENST00000354497 CELF1Q92879 486 aaKnown RBP14.69□□□□□ -0.06
RTN3-204ENST00000354497 ANKRD36CQ5JPF3 1778 aa14.69□□□□□ -0.06
RTN3-204ENST00000354497 SPDYE2BA6NHP3 402 aa14.68□□□□□ -0.06
RTN3-204ENST00000354497 SPDYE6P0CI01 402 aa14.68□□□□□ -0.06
RTN3-204ENST00000354497 NFE2L2Q16236 605 aa14.68□□□□□ -0.06
RTN3-204ENST00000354497 PKN2Q16513 984 aaKnown RBP14.68□□□□□ -0.06
RTN3-204ENST00000354497 SPDYE2Q495Y8 402 aa14.68□□□□□ -0.06
RTN3-204ENST00000354497 ANGEL2Q5VTE6 544 aaKnown RBP14.68□□□□□ -0.06
RTN3-204ENST00000354497 ZNF296Q8WUU4 475 aaPredicted RBP14.68□□□□□ -0.06
RTN3-204ENST00000354497 POLLQ9UGP5 575 aa14.68□□□□□ -0.06
RTN3-204ENST00000354497 MAPK8IP3Q9UPT6 1336 aa14.68□□□□□ -0.06
RTN3-204ENST00000354497 TAF1P21675 1872 aa14.68□□□□□ -0.06
RTN3-204ENST00000354497 TCIRG1Q13488 830 aa14.67□□□□□ -0.06
RTN3-204ENST00000354497 LRP10Q7Z4F1 713 aa14.67□□□□□ -0.06
RTN3-204ENST00000354497 DAXXQ9UER7 740 aaPredicted RBP14.67□□□□□ -0.06
RTN3-204ENST00000354497 DLG5Q8TDM6 1919 aa14.67□□□□□ -0.06
RTN3-204ENST00000354497 LRRC37AA6NMS7 1700 aa14.67□□□□□ -0.06
RTN3-204ENST00000354497 MKRN3Q13064 507 aaKnown RBP14.66□□□□□ -0.06
RTN3-204ENST00000354497 SCARF1Q14162 830 aa14.66□□□□□ -0.06
RTN3-204ENST00000354497 TTLL12Q14166 644 aaPredicted RBP14.66□□□□□ -0.06
RTN3-204ENST00000354497 MOB2Q70IA6 237 aa14.66□□□□□ -0.06
RTN3-204ENST00000354497 GCC1Q96CN9 775 aa14.66□□□□□ -0.06
RTN3-204ENST00000354497 SCAF8Q9UPN6 1271 aaKnown RBP14.66□□□□□ -0.06
RTN3-204ENST00000354497 RTL5Q5HYW3 569 aaPredicted RBP14.66□□□□□ -0.06
RTN3-204ENST00000354497 ZC3H12CQ9C0D7 883 aaKnown RBP14.66□□□□□ -0.06
RTN3-204ENST00000354497 UBE2Q2LH0YL09 131 aa14.65□□□□□ -0.06
RTN3-204ENST00000354497 TBC1D16Q8TBP0 767 aa14.65□□□□□ -0.06
RTN3-204ENST00000354497 FAM89AQ96GI7 184 aa14.65□□□□□ -0.06
RTN3-204ENST00000354497 DDX60Q8IY21 1712 aaKnown RBP14.64□□□□□ -0.07
RTN3-204ENST00000354497 UFL1O94874 794 aa14.64□□□□□ -0.07
RTN3-204ENST00000354497 VIL1P09327 827 aaKnown RBP14.64□□□□□ -0.07
RTN3-204ENST00000354497 FKBP1BP68106 108 aa14.64□□□□□ -0.07
RTN3-204ENST00000354497 POLR2AP24928 1970 aaKnown RBP14.64□□□□□ -0.07
RTN3-204ENST00000354497 PAPPA2Q9BXP8 1791 aa14.63□□□□□ -0.07
RTN3-204ENST00000354497 ATP5J2-PTCD1G3V325 749 aa14.63□□□□□ -0.07
RTN3-204ENST00000354497 GPR25O00155 361 aa14.63□□□□□ -0.07
RTN3-204ENST00000354497 PRAMEF18Q5VWM3 479 aa14.63□□□□□ -0.07
RTN3-204ENST00000354497 FBXO46Q6PJ61 603 aaPredicted RBP14.63□□□□□ -0.07
RTN3-204ENST00000354497 PLEKHF1Q96S99 279 aa14.63□□□□□ -0.07
RTN3-204ENST00000354497 ANKIB1Q9P2G1 1089 aa14.63□□□□□ -0.07
RTN3-204ENST00000354497 HABP4Q5JVS0 413 aaKnown RBP14.62□□□□□ -0.07
RTN3-204ENST00000354497 RSBN1LQ6PCB5 846 aaPredicted RBP14.62□□□□□ -0.07
RTN3-204ENST00000354497 MYOZ2Q9NPC6 264 aa14.62□□□□□ -0.07
RTN3-204ENST00000354497 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.62□□□□□ -0.07
RTN3-204ENST00000354497 COL4A1P02462 1669 aa14.62□□□□□ -0.07
RTN3-204ENST00000354497 ZNF280AP59817 542 aaPredicted RBP14.61□□□□□ -0.07
RTN3-204ENST00000354497 SF3B3Q15393 1217 aaKnown RBP14.61□□□□□ -0.07
RTN3-204ENST00000354497 PNNQ9H307 717 aaKnown RBP14.61□□□□□ -0.07
RTN3-204ENST00000354497 GGA1Q9UJY5 639 aa14.61□□□□□ -0.07
RTN3-204ENST00000354497 FKTNO75072 461 aa14.6□□□□□ -0.07
RTN3-204ENST00000354497 USP17L8P0C7I0 530 aa14.6□□□□□ -0.07
RTN3-204ENST00000354497 RPS8P62241 208 aaKnown RBP14.6□□□□□ -0.07
RTN3-204ENST00000354497 AGBL3Q8NEM8 1001 aa14.6□□□□□ -0.07
RTN3-204ENST00000354497 FBXW7Q969H0 707 aa14.6□□□□□ -0.07
RTN3-204ENST00000354497 CHPF2Q9P2E5 772 aa14.6□□□□□ -0.07
RTN3-204ENST00000354497 IRS4O14654 1257 aaPredicted RBP14.59□□□□□ -0.07
RTN3-204ENST00000354497 NF2P35240 595 aa14.59□□□□□ -0.07
RTN3-204ENST00000354497 RIPK4P57078 832 aa14.59□□□□□ -0.07
RTN3-204ENST00000354497 SREBF2Q12772 1141 aa14.59□□□□□ -0.07
RTN3-204ENST00000354497 PRKG1Q13976 671 aa14.59□□□□□ -0.07
RTN3-204ENST00000354497 LAS1LQ9Y4W2 734 aaKnown RBP14.59□□□□□ -0.07
RTN3-204ENST00000354497 PITPNM2Q9BZ72 1349 aa14.58□□□□□ -0.07
RTN3-204ENST00000354497 KRT24Q2M2I5 525 aa14.58□□□□□ -0.07
RTN3-204ENST00000354497 PLBD2Q8NHP8 589 aa14.58□□□□□ -0.07
RTN3-204ENST00000354497 SEC31BQ9NQW1 1179 aa14.58□□□□□ -0.07
RTN3-204ENST00000354497 SCN9AQ15858 1988 aa14.58□□□□□ -0.08
RTN3-204ENST00000354497 TM4SF4P48230 202 aa14.58□□□□□ -0.08
RTN3-204ENST00000354497 ANKRD13DQ6ZTN6 518 aa14.58□□□□□ -0.08
RTN3-204ENST00000354497 CCDC85AQ96PX6 553 aaPredicted RBP14.58□□□□□ -0.08
RTN3-204ENST00000354497 ISCA1Q9BUE6 129 aa14.58□□□□□ -0.08
RTN3-204ENST00000354497 NBPF9Q3BBW0 867 aa14.57□□□□□ -0.08
RTN3-204ENST00000354497 HDGFL1Q5TGJ6 251 aa14.57□□□□□ -0.08
RTN3-204ENST00000354497 R3HDMLQ9H3Y0 253 aa14.57□□□□□ -0.08
RTN3-204ENST00000354497 PODXL2Q9NZ53 605 aa14.57□□□□□ -0.08
RTN3-204ENST00000354497 TRIM17Q9Y577 477 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms