RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 EYA3Q99504 573 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 ARGLU1Q9NWB6 273 aaPredicted RBP17.26■□□□□ 0.35
COL17A1-201ENST00000353479 KCNQ3O43525 872 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 LDHBP07195 334 aaKnown RBP17.26■□□□□ 0.35
COL17A1-201ENST00000353479 RBM26Q5T8P6 1007 aaKnown RBP17.26■□□□□ 0.35
COL17A1-201ENST00000353479 CCDC24Q8N4L8 307 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 A0A1B0GUL7 405 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 IL17REQ8NFR9 667 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 RUFY1Q96T51 708 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 UBA5Q9GZZ9 404 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 MCM9Q9NXL9 1143 aa17.26■□□□□ 0.35
COL17A1-201ENST00000353479 KIF1BO60333 1816 aa17.25■□□□□ 0.35
COL17A1-201ENST00000353479 EIF5P55010 431 aaKnown RBP17.25■□□□□ 0.35
COL17A1-201ENST00000353479 JDP2Q8WYK2 163 aa17.25■□□□□ 0.35
COL17A1-201ENST00000353479 CFAP100Q494V2 611 aa17.25■□□□□ 0.35
COL17A1-201ENST00000353479 CNNM3Q8NE01 707 aa17.25■□□□□ 0.35
COL17A1-201ENST00000353479 SEPT11Q9NVA2 429 aaKnown RBP17.25■□□□□ 0.35
COL17A1-201ENST00000353479 TMTC2Q8N394 836 aa17.25■□□□□ 0.35
COL17A1-201ENST00000353479 INSRP06213 1382 aa17.25■□□□□ 0.35
COL17A1-201ENST00000353479 BAG4O95429 457 aaKnown RBP17.25■□□□□ 0.35
COL17A1-201ENST00000353479 SUCLG2Q96I99 432 aa17.25■□□□□ 0.35
COL17A1-201ENST00000353479 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.25■□□□□ 0.35
COL17A1-201ENST00000353479 NBPF7P0C2Y1 421 aaPredicted RBP17.24■□□□□ 0.35
COL17A1-201ENST00000353479 GNAT2P19087 354 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 RTN1Q16799 776 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 CKAP2LQ8IYA6 745 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 BRPF3Q9ULD4 1205 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 PRC1O43663 620 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 ANAPC15P60006 121 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 TRMT1LQ7Z2T5 733 aaKnown RBP17.24■□□□□ 0.35
COL17A1-201ENST00000353479 SCLT1Q96NL6 688 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 LUC7LQ9NQ29 371 aaKnown RBP17.24■□□□□ 0.35
COL17A1-201ENST00000353479 SHROOM2Q13796 1616 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 CHST3Q7LGC8 479 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 PANK2Q9BZ23 570 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 UFL1O94874 794 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 CCDC178Q5BJE1 867 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 ANO10Q9NW15 660 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 ABCC3O15438 1527 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 GCKRQ14397 625 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 TNNI3KQ59H18 835 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 FPGT-TNNI3KV9GXZ4 949 aa17.24■□□□□ 0.35
COL17A1-201ENST00000353479 KIAA0232Q92628 1395 aa17.23■□□□□ 0.35
COL17A1-201ENST00000353479 FAM177A1Q8N128 213 aaPredicted RBP17.23■□□□□ 0.35
COL17A1-201ENST00000353479 APBA3O96018 575 aa17.23■□□□□ 0.35
COL17A1-201ENST00000353479 HSP90AA2PQ14568 343 aaPredicted RBP17.22■□□□□ 0.35
COL17A1-201ENST00000353479 ALG1Q9BT22 464 aa17.22■□□□□ 0.35
COL17A1-201ENST00000353479 CHMLP26374 656 aa17.22■□□□□ 0.35
COL17A1-201ENST00000353479 PUM3Q15397 648 aaKnown RBP17.22■□□□□ 0.35
COL17A1-201ENST00000353479 DBNDD2Q9BQY9 259 aa17.22■□□□□ 0.35
COL17A1-201ENST00000353479 TCP11L1Q9NUJ3 509 aa17.22■□□□□ 0.35
COL17A1-201ENST00000353479 PLCG2P16885 1265 aa17.22■□□□□ 0.35
COL17A1-201ENST00000353479 OTUD7AQ8TE49 926 aaPredicted RBP17.22■□□□□ 0.35
COL17A1-201ENST00000353479 DENND2AQ9ULE3 1009 aa17.22■□□□□ 0.35
COL17A1-201ENST00000353479 BLMP54132 1417 aaPredicted RBP17.22■□□□□ 0.35
COL17A1-201ENST00000353479 PPP1R12BO60237 982 aaPredicted RBP17.22■□□□□ 0.35
COL17A1-201ENST00000353479 MYCNP04198 464 aaPredicted RBP17.22■□□□□ 0.35
COL17A1-201ENST00000353479 C8orf34Q49A92 452 aa17.22■□□□□ 0.35
COL17A1-201ENST00000353479 CREB3L3Q68CJ9 461 aa17.22■□□□□ 0.35
COL17A1-201ENST00000353479 PPP4R3AQ6IN85 833 aa17.21■□□□□ 0.35
COL17A1-201ENST00000353479 CCDC171Q6TFL3 1326 aa17.21■□□□□ 0.35
COL17A1-201ENST00000353479 GIGYF1O75420 1035 aaPredicted RBP17.21■□□□□ 0.35
COL17A1-201ENST00000353479 TAF5LO75529 589 aa17.21■□□□□ 0.35
COL17A1-201ENST00000353479 HEATR3Q7Z4Q2 680 aa17.21■□□□□ 0.35
COL17A1-201ENST00000353479 CLEC11AQ9Y240 323 aa17.21■□□□□ 0.35
COL17A1-201ENST00000353479 XAGE2Q96GT9 111 aa17.21■□□□□ 0.35
COL17A1-201ENST00000353479 TSG101Q99816 390 aa17.21■□□□□ 0.35
COL17A1-201ENST00000353479 PNMA6EA0A0J9YXQ4 647 aa17.2■□□□□ 0.34
COL17A1-201ENST00000353479 MBD4O95243 580 aa17.2■□□□□ 0.34
COL17A1-201ENST00000353479 CALML4Q96GE6 196 aa17.2■□□□□ 0.34
COL17A1-201ENST00000353479 HIBADHP31937 336 aaKnown RBP17.2■□□□□ 0.34
COL17A1-201ENST00000353479 CDC42BPAQ5VT25 1732 aa17.2■□□□□ 0.34
COL17A1-201ENST00000353479 KDM5CP41229 1560 aa17.2■□□□□ 0.34
COL17A1-201ENST00000353479 PRR36Q9H6K5 1346 aa17.2■□□□□ 0.34
COL17A1-201ENST00000353479 ATP7BP35670 1465 aa17.2■□□□□ 0.34
COL17A1-201ENST00000353479 BIN1O00499 593 aa17.19■□□□□ 0.34
COL17A1-201ENST00000353479 ZSCAN22P10073 491 aaPredicted RBP17.19■□□□□ 0.34
COL17A1-201ENST00000353479 UBA7P41226 1012 aa17.19■□□□□ 0.34
COL17A1-201ENST00000353479 RBM25P49756 843 aaKnown RBP17.19■□□□□ 0.34
COL17A1-201ENST00000353479 ARHGEF25Q86VW2 580 aa17.19■□□□□ 0.34
COL17A1-201ENST00000353479 USP6P35125 1406 aa17.19■□□□□ 0.34
COL17A1-201ENST00000353479 CTAGE5O15320 804 aa17.19■□□□□ 0.34
COL17A1-201ENST00000353479 ZSCAN16Q9H4T2 348 aaPredicted RBP17.19■□□□□ 0.34
COL17A1-201ENST00000353479 ZNF335Q9H4Z2 1342 aaPredicted RBP17.19■□□□□ 0.34
COL17A1-201ENST00000353479 PPP4R3BQ5MIZ7 849 aa17.19■□□□□ 0.34
COL17A1-201ENST00000353479 DDX19AQ9NUU7 478 aaKnown RBP17.19■□□□□ 0.34
COL17A1-201ENST00000353479 SAMM50Q9Y512 469 aa17.19■□□□□ 0.34
COL17A1-201ENST00000353479 GNAQP50148 359 aa17.18■□□□□ 0.34
COL17A1-201ENST00000353479 GGA1Q9UJY5 639 aa17.18■□□□□ 0.34
COL17A1-201ENST00000353479 IDEP14735 1019 aa17.18■□□□□ 0.34
COL17A1-201ENST00000353479 ACBD3Q9H3P7 528 aa17.18■□□□□ 0.34
COL17A1-201ENST00000353479 RDXP35241 583 aaKnown RBP17.18■□□□□ 0.34
COL17A1-201ENST00000353479 AATKQ6ZMQ8 1374 aa17.18■□□□□ 0.34
COL17A1-201ENST00000353479 APOBRQ0VD83 1088 aa17.18■□□□□ 0.34
COL17A1-201ENST00000353479 CCDC129Q6ZRS4 1044 aa17.18■□□□□ 0.34
COL17A1-201ENST00000353479 TXLNBQ8N3L3 684 aa17.18■□□□□ 0.34
COL17A1-201ENST00000353479 RAD50Q92878 1312 aa17.17■□□□□ 0.34
COL17A1-201ENST00000353479 LIG1P18858 919 aa17.17■□□□□ 0.34
COL17A1-201ENST00000353479 TET3O43151 1660 aa17.17■□□□□ 0.34
COL17A1-201ENST00000353479 NEURL1BA8MQ27 555 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms