RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 PALD1Q9ULE6 856 aa10.36□□□□□ -0.75
TRIM55-204ENST00000353317 NIP7Q9Y221 180 aaKnown RBP eCLIP10.36□□□□□ -0.75
TRIM55-204ENST00000353317 NTSR2O95665 410 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 HS1BP3Q53T59 392 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 LRSAM1Q6UWE0 723 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 BICDL1Q6ZP65 573 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 C3orf67Q6ZVT6 689 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 AACSQ86V21 672 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 CDHR2Q9BYE9 1310 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 PHF14O94880 888 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 HSP90AB4PQ58FF6 505 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 HSP90AB3PQ58FF7 597 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 ESYT1Q9BSJ8 1104 aa10.35□□□□□ -0.75
TRIM55-204ENST00000353317 NOL7Q9UMY1 257 aaKnown RBP10.35□□□□□ -0.75
TRIM55-204ENST00000353317 SCN7AQ01118 1682 aa10.34□□□□□ -0.75
TRIM55-204ENST00000353317 RXRBP28702 533 aa10.34□□□□□ -0.75
TRIM55-204ENST00000353317 CLASRPQ8N2M8 674 aaKnown RBP10.34□□□□□ -0.75
TRIM55-204ENST00000353317 CCDC24Q8N4L8 307 aa10.34□□□□□ -0.75
TRIM55-204ENST00000353317 DBNLQ9UJU6 430 aaKnown RBP10.34□□□□□ -0.75
TRIM55-204ENST00000353317 NDUFB9Q9Y6M9 179 aa10.34□□□□□ -0.75
TRIM55-204ENST00000353317 BRD1O95696 1058 aa10.34□□□□□ -0.75
TRIM55-204ENST00000353317 TIMM10P62072 90 aa10.34□□□□□ -0.75
TRIM55-204ENST00000353317 GLIPR1L2Q4G1C9 344 aa10.34□□□□□ -0.75
TRIM55-204ENST00000353317 USP42Q9H9J4 1324 aaKnown RBP10.33□□□□□ -0.76
TRIM55-204ENST00000353317 CTSWP56202 376 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 CUL4AQ13619 759 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 FBXO41Q8TF61 875 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 SEC31BQ9NQW1 1179 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 NARFQ9UHQ1 456 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 ITGA6P23229 1130 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 CHMLP26374 656 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 MCM2P49736 904 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 ERFEQ4G0M1 354 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 TNNI3KQ59H18 835 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 NOL8Q76FK4 1167 aaKnown RBP10.33□□□□□ -0.76
TRIM55-204ENST00000353317 RILPL2Q969X0 211 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 EDC3Q96F86 508 aaKnown RBP10.33□□□□□ -0.76
TRIM55-204ENST00000353317 DBNDD2Q9BQY9 259 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 ANO2Q9NQ90 1003 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 FPGT-TNNI3KV9GXZ4 949 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 SPEF2Q9C093 1822 aa10.33□□□□□ -0.76
TRIM55-204ENST00000353317 EYA2O00167 538 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 ZNF500O60304 480 aaPredicted RBP10.32□□□□□ -0.76
TRIM55-204ENST00000353317 PDE8AO60658 829 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.32□□□□□ -0.76
TRIM55-204ENST00000353317 ERC1Q8IUD2 1116 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 UTP14AQ9BVJ6 771 aaKnown RBP10.32□□□□□ -0.76
TRIM55-204ENST00000353317 RTCBQ9Y3I0 505 aaKnown RBP10.32□□□□□ -0.76
TRIM55-204ENST00000353317 LAMB2P55268 1798 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 SH3TC1Q8TE82 1336 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 TRIM6-TRIM34B2RNG4 842 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 MBD3O95983 291 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 CHGBP05060 677 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 TXNRD1Q16881 649 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 CLEC4GQ6UXB4 293 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 RNF214Q8ND24 703 aa10.32□□□□□ -0.76
TRIM55-204ENST00000353317 SNAP23O00161 211 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 IFIT2P09913 472 aaKnown RBP10.31□□□□□ -0.76
TRIM55-204ENST00000353317 ANAPC15P60006 121 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 CCDC57Q2TAC2 916 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 SLC51AQ86UW1 340 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 ECHDC1Q9NTX5 307 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 RIPOR2Q9Y4F9 1068 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 ABCC12Q96J65 1359 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.31□□□□□ -0.76
TRIM55-204ENST00000353317 MCCP23508 829 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 IFIT5Q13325 482 aaKnown RBP10.31□□□□□ -0.76
TRIM55-204ENST00000353317 INTS4Q96HW7 963 aaKnown RBP10.31□□□□□ -0.76
TRIM55-204ENST00000353317 UPF3BQ9BZI7 483 aaKnown RBP10.31□□□□□ -0.76
TRIM55-204ENST00000353317 BOLA2Q9H3K6 86 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 ZKSCAN5Q9Y2L8 839 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 AOX1Q06278 1338 aa10.31□□□□□ -0.76
TRIM55-204ENST00000353317 WTIPA6NIX2 430 aaPredicted RBP10.3□□□□□ -0.76
TRIM55-204ENST00000353317 ZNF827Q17R98 1081 aa10.3□□□□□ -0.76
TRIM55-204ENST00000353317 FOXD4L6Q3SYB3 417 aaPredicted RBP10.3□□□□□ -0.76
TRIM55-204ENST00000353317 FOXD4L3Q6VB84 417 aaPredicted RBP10.3□□□□□ -0.76
TRIM55-204ENST00000353317 R3HCC1Q9Y3T6 440 aaKnown RBP10.3□□□□□ -0.76
TRIM55-204ENST00000353317 COL24A1Q17RW2 1714 aa10.3□□□□□ -0.76
TRIM55-204ENST00000353317 TNS1Q9HBL0 1735 aaKnown RBP10.3□□□□□ -0.76
TRIM55-204ENST00000353317 RIC1Q4ADV7 1423 aa10.3□□□□□ -0.76
TRIM55-204ENST00000353317 APBA3O96018 575 aa10.3□□□□□ -0.76
TRIM55-204ENST00000353317 ADORA1P30542 326 aa10.3□□□□□ -0.76
TRIM55-204ENST00000353317 TERF1P54274 439 aa10.3□□□□□ -0.76
TRIM55-204ENST00000353317 PARP10Q53GL7 1025 aa10.3□□□□□ -0.76
TRIM55-204ENST00000353317 TRAPPC3LQ5T215 181 aa10.3□□□□□ -0.76
TRIM55-204ENST00000353317 TTC41PQ6P2S7 1318 aa10.3□□□□□ -0.76
TRIM55-204ENST00000353317 IL15P40933 162 aaPredicted RBP10.29□□□□□ -0.76
TRIM55-204ENST00000353317 HELBQ8NG08 1087 aaPredicted RBP10.29□□□□□ -0.76
TRIM55-204ENST00000353317 IL17RAQ96F46 866 aa10.29□□□□□ -0.76
TRIM55-204ENST00000353317 AK7Q96M32 723 aa10.29□□□□□ -0.76
TRIM55-204ENST00000353317 PDCL3Q9H2J4 239 aa10.29□□□□□ -0.76
TRIM55-204ENST00000353317 GDPD2Q9HCC8 539 aa10.29□□□□□ -0.76
TRIM55-204ENST00000353317 ZPR1O75312 459 aa10.29□□□□□ -0.76
TRIM55-204ENST00000353317 CIAO1O76071 339 aa10.29□□□□□ -0.76
TRIM55-204ENST00000353317 LDHAL6AQ6ZMR3 332 aa10.29□□□□□ -0.76
TRIM55-204ENST00000353317 VGLL2Q8N8G2 317 aa10.29□□□□□ -0.76
TRIM55-204ENST00000353317 MYO5AQ9Y4I1 1855 aaKnown RBP10.29□□□□□ -0.76
TRIM55-204ENST00000353317 A0A1B0GUL7 405 aa10.28□□□□□ -0.76
TRIM55-204ENST00000353317 GADD45BO75293 160 aaPredicted RBP10.28□□□□□ -0.76
TRIM55-204ENST00000353317 GLRX3O76003 335 aaKnown RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms