RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 C1orf141Q5JVX7 400 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 ZNF397Q8NF99 534 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-202ENST00000347037 CEMIPQ8WUJ3 1361 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 KRT222Q8N1A0 295 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 FSIP1Q8NA03 581 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 MRFAP1L1Q96HT8 127 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 KAZALD1Q96I82 304 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 NEMFO60524 1076 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 FMNL2Q96PY5 1086 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 TAOK2Q9UL54 1235 aa12.99□□□□□ -0.33
SYNE1-202ENST00000347037 MED23Q9ULK4 1368 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 MYL6BP14649 208 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 LINS1Q8NG48 757 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 SDF4Q9BRK5 362 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 N4BP2Q86UW6 1770 aaPredicted RBP12.98□□□□□ -0.33
SYNE1-202ENST00000347037 SMC2O95347 1197 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 DDX58O95786 925 aaKnown RBP12.98□□□□□ -0.33
SYNE1-202ENST00000347037 GABPB1Q06547 395 aaPredicted RBP12.98□□□□□ -0.33
SYNE1-202ENST00000347037 CEP57L1Q8IYX8 460 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 ANO10Q9NW15 660 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 CRYBG1Q9Y4K1 1723 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 ERICH4A6NGS2 130 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 CTAGE5O15320 804 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 APOBRQ0VD83 1088 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 USP28Q96RU2 1077 aa12.98□□□□□ -0.33
SYNE1-202ENST00000347037 GIGYF1O75420 1035 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-202ENST00000347037 FBXO38Q6PIJ6 1188 aa12.97□□□□□ -0.33
SYNE1-202ENST00000347037 SARM1Q6SZW1 724 aa12.97□□□□□ -0.33
SYNE1-202ENST00000347037 DDX46Q7L014 1031 aaKnown RBP12.97□□□□□ -0.33
SYNE1-202ENST00000347037 NCOA5Q9HCD5 579 aaKnown RBP12.97□□□□□ -0.33
SYNE1-202ENST00000347037 MORC2Q9Y6X9 1032 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-202ENST00000347037 PIK3C2AO00443 1686 aa12.97□□□□□ -0.33
SYNE1-202ENST00000347037 CYP21A2P08686 494 aa12.97□□□□□ -0.33
SYNE1-202ENST00000347037 PLEKHO1Q53GL0 409 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-202ENST00000347037 DHX40Q8IX18 779 aaKnown RBP12.97□□□□□ -0.33
SYNE1-202ENST00000347037 CCAR2Q8N163 923 aaKnown RBP12.97□□□□□ -0.33
SYNE1-202ENST00000347037 ALDH8A1Q9H2A2 487 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-202ENST00000347037 ADGRL3Q9HAR2 1447 aa12.97□□□□□ -0.33
SYNE1-202ENST00000347037 PTPDC1A2A3K4 754 aa12.97□□□□□ -0.33
SYNE1-202ENST00000347037 RBM6P78332 1123 aaKnown RBP12.97□□□□□ -0.33
SYNE1-202ENST00000347037 CCZ1BP86790 482 aa12.97□□□□□ -0.33
SYNE1-202ENST00000347037 CCZ1P86791 482 aaPredicted RBP12.97□□□□□ -0.33
SYNE1-202ENST00000347037 AKAP4Q5JQC9 854 aa12.97□□□□□ -0.33
SYNE1-202ENST00000347037 SLU7O95391 586 aaKnown RBP12.96□□□□□ -0.33
SYNE1-202ENST00000347037 GORABQ5T7V8 394 aa12.96□□□□□ -0.33
SYNE1-202ENST00000347037 NYAP1Q6ZVC0 841 aa12.96□□□□□ -0.33
SYNE1-202ENST00000347037 CHST3Q7LGC8 479 aa12.96□□□□□ -0.33
SYNE1-202ENST00000347037 TBX22Q9Y458 520 aa12.96□□□□□ -0.33
SYNE1-202ENST00000347037 SNW1Q13573 536 aaKnown RBP12.96□□□□□ -0.33
SYNE1-202ENST00000347037 ERO1AQ96HE7 468 aa12.96□□□□□ -0.33
SYNE1-202ENST00000347037 NAT10Q9H0A0 1025 aaKnown RBP12.96□□□□□ -0.33
SYNE1-202ENST00000347037 ST7Q9NRC1 585 aa12.96□□□□□ -0.33
SYNE1-202ENST00000347037 SLFN14P0C7P3 912 aa12.96□□□□□ -0.34
SYNE1-202ENST00000347037 NEXNQ0ZGT2 675 aa12.96□□□□□ -0.34
SYNE1-202ENST00000347037 ZNF396Q96N95 335 aaPredicted RBP12.96□□□□□ -0.34
SYNE1-202ENST00000347037 U3KPZ7 1027 aaPredicted RBP12.96□□□□□ -0.34
SYNE1-202ENST00000347037 COL15A1P39059 1388 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 A0A1B0GVL5 298 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 BIN1O00499 593 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 RNMTO43148 476 aaKnown RBP12.95□□□□□ -0.34
SYNE1-202ENST00000347037 FAM160A1Q05DH4 1040 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 TFCP2Q12800 502 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 SF3A1Q15459 793 aaKnown RBP12.95□□□□□ -0.34
SYNE1-202ENST00000347037 SLFNL1Q499Z3 407 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 TMC6Q7Z403 805 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 IP6K1Q92551 441 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 SNRKQ9NRH2 765 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 DBNLQ9UJU6 430 aaKnown RBP12.95□□□□□ -0.34
SYNE1-202ENST00000347037 XIRP1Q702N8 1843 aaKnown RBP12.95□□□□□ -0.34
SYNE1-202ENST00000347037 EPHA10Q5JZY3 1008 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 NSUN7Q8NE18 718 aaKnown RBP12.95□□□□□ -0.34
SYNE1-202ENST00000347037 MYD88Q99836 296 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 TSGA10IPQ3SY00 556 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 SYT10Q6XYQ8 523 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 RBM33Q96EV2 1170 aaKnown RBP12.95□□□□□ -0.34
SYNE1-202ENST00000347037 RCOR1Q9UKL0 485 aa12.95□□□□□ -0.34
SYNE1-202ENST00000347037 STRCQ7RTU9 1775 aa12.94□□□□□ -0.34
SYNE1-202ENST00000347037 ADD1P35611 737 aaKnown RBP12.94□□□□□ -0.34
SYNE1-202ENST00000347037 TERF2Q15554 542 aa12.94□□□□□ -0.34
SYNE1-202ENST00000347037 LMOD2Q6P5Q4 547 aa12.94□□□□□ -0.34
SYNE1-202ENST00000347037 PIP4K2AP48426 406 aaPredicted RBP12.94□□□□□ -0.34
SYNE1-202ENST00000347037 ERCC6LQ2NKX8 1250 aa12.94□□□□□ -0.34
SYNE1-202ENST00000347037 MCMDC2Q4G0Z9 681 aa12.94□□□□□ -0.34
SYNE1-202ENST00000347037 HOMER1Q86YM7 354 aa12.94□□□□□ -0.34
SYNE1-202ENST00000347037 IGKV5-2P06315 115 aa12.94□□□□□ -0.34
SYNE1-202ENST00000347037 STOX1Q6ZVD7 989 aa12.94□□□□□ -0.34
SYNE1-202ENST00000347037 DBNDD2Q9BQY9 259 aa12.94□□□□□ -0.34
SYNE1-202ENST00000347037 IFNKQ9P0W0 207 aa12.94□□□□□ -0.34
SYNE1-202ENST00000347037 GSDMDP57764 484 aa12.93□□□□□ -0.34
SYNE1-202ENST00000347037 SLC39A6Q13433 755 aa12.93□□□□□ -0.34
SYNE1-202ENST00000347037 USPL1Q5W0Q7 1092 aa12.93□□□□□ -0.34
SYNE1-202ENST00000347037 ISM2Q6H9L7 571 aa12.93□□□□□ -0.34
SYNE1-202ENST00000347037 PFKFB2O60825 505 aa12.93□□□□□ -0.34
SYNE1-202ENST00000347037 TNNI3KQ59H18 835 aa12.93□□□□□ -0.34
SYNE1-202ENST00000347037 OTUD7BQ6GQQ9 843 aa12.93□□□□□ -0.34
SYNE1-202ENST00000347037 FPGT-TNNI3KV9GXZ4 949 aa12.93□□□□□ -0.34
SYNE1-202ENST00000347037 CTDNEP1O95476 244 aa12.93□□□□□ -0.34
SYNE1-202ENST00000347037 NAA16Q6N069 864 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-202ENST00000347037 THEMISQ8N1K5 641 aaPredicted RBP12.93□□□□□ -0.34
SYNE1-202ENST00000347037 MRPS27Q92552 414 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms