RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 PI4KAP2A4QPH2 592 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 EFCAB8A8MWE9 144 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 BMP15O95972 392 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 FAM160A1Q05DH4 1040 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 TMTC2Q8N394 836 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 MICALL1Q8N3F8 863 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 PI4KAP1Q8N8J0 262 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 MKRN1Q9UHC7 482 aaKnown RBP5.48□□□□□ -1.53
CSMD3-203ENST00000343508 CABP4P57796 275 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 MYL5Q02045 173 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 CACNA2D4Q7Z3S7 1137 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 FAM114A1Q8IWE2 563 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 IFNKQ9P0W0 207 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 GRM8O00222 908 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 TSGA10Q9BZW7 698 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.48□□□□□ -1.53
CSMD3-203ENST00000343508 GOLIM4O00461 696 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 EZRP15311 586 aaKnown RBP5.48□□□□□ -1.53
CSMD3-203ENST00000343508 TAF4BQ92750 862 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 SETBP1Q9Y6X0 1596 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 IGSF3O75054 1194 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 IDI1Q13907 227 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 SMC1AQ14683 1233 aaKnown RBP5.48□□□□□ -1.53
CSMD3-203ENST00000343508 OSCARQ8IYS5 282 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 TM6SF1Q9BZW5 370 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 G3V3G9 751 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 CYLC1P35663 651 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-203ENST00000343508 ELF2Q15723 593 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 DCAF8Q5TAQ9 597 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 GNL3LQ9NVN8 582 aaKnown RBP5.48□□□□□ -1.53
CSMD3-203ENST00000343508 TRIM21P19474 475 aaKnown RBP5.48□□□□□ -1.53
CSMD3-203ENST00000343508 LMOD1P29536 600 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-203ENST00000343508 TDO2P48775 406 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 DYDC1Q8WWB3 177 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 TMX1Q9H3N1 280 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 RNF41Q9H4P4 317 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-203ENST00000343508 ENOX2Q16206 610 aaKnown RBP5.48□□□□□ -1.53
CSMD3-203ENST00000343508 PDLIM2Q96JY6 352 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 NAPBQ9H115 298 aa5.48□□□□□ -1.53
CSMD3-203ENST00000343508 CNGA4Q8IV77 575 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 DDX54Q8TDD1 881 aaKnown RBP5.47□□□□□ -1.53
CSMD3-203ENST00000343508 ARHGAP6O43182 974 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 PKP1Q13835 747 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 IFI16Q16666 785 aaKnown RBP5.47□□□□□ -1.53
CSMD3-203ENST00000343508 B4GALNT4Q76KP1 1039 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 IQCA1Q86XH1 822 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 MRFAP1L1Q96HT8 127 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 TCEAL9Q9UHQ7 104 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 ERVK-7P63135 1459 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 SEPT7Q16181 437 aaKnown RBP5.47□□□□□ -1.53
CSMD3-203ENST00000343508 GIGYF2Q6Y7W6 1299 aaKnown RBP5.47□□□□□ -1.53
CSMD3-203ENST00000343508 ANKS4BQ8N8V4 417 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 CPLX3Q8WVH0 158 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 BRF1Q92994 677 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 OSBPL3Q9H4L5 887 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 RNF17Q9BXT8 1623 aaKnown RBP5.47□□□□□ -1.53
CSMD3-203ENST00000343508 VPS36Q86VN1 386 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 ERBB4Q15303 1308 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 ESCO1Q5FWF5 840 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 TAOK3Q9H2K8 898 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 BMP2KQ9NSY1 1161 aaPredicted RBP5.47□□□□□ -1.53
CSMD3-203ENST00000343508 SPAG1Q07617 926 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 ZFYP08048 801 aaPredicted RBP5.47□□□□□ -1.53
CSMD3-203ENST00000343508 ZNF287Q9HBT7 754 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 YTHDC2Q9H6S0 1430 aaKnown RBP5.47□□□□□ -1.53
CSMD3-203ENST00000343508 ANKRD18AQ8IVF6 992 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 TTF2Q9UNY4 1162 aaKnown RBP5.47□□□□□ -1.53
CSMD3-203ENST00000343508 FLT4P35916 1363 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 CHMP4BP1P59074 171 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 SPECC1LQ69YQ0 1117 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 FAM76AQ8TAV0 307 aa5.47□□□□□ -1.53
CSMD3-203ENST00000343508 NR1I2O75469 434 aa5.46□□□□□ -1.53
CSMD3-203ENST00000343508 RAPGEF3O95398 923 aa5.46□□□□□ -1.53
CSMD3-203ENST00000343508 NMIQ13287 307 aaPredicted RBP5.46□□□□□ -1.53
CSMD3-203ENST00000343508 DHX32Q7L7V1 743 aaKnown RBP5.46□□□□□ -1.53
CSMD3-203ENST00000343508 POTEDQ86YR6 584 aa5.46□□□□□ -1.53
CSMD3-203ENST00000343508 RAB34Q9BZG1 259 aa5.46□□□□□ -1.53
CSMD3-203ENST00000343508 IDH1O75874 414 aaKnown RBP5.46□□□□□ -1.53
CSMD3-203ENST00000343508 NUTM2AQ8IVF1 878 aaPredicted RBP5.46□□□□□ -1.53
CSMD3-203ENST00000343508 OTUD6BQ8N6M0 293 aa5.46□□□□□ -1.53
CSMD3-203ENST00000343508 TSG101Q99816 390 aa5.46□□□□□ -1.53
CSMD3-203ENST00000343508 ARHGEF10O15013 1369 aa5.46□□□□□ -1.53
CSMD3-203ENST00000343508 ZSWIM4Q9H7M6 989 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 PTPDC1A2A3K4 754 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 GBP2P32456 591 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-203ENST00000343508 ORC3Q9UBD5 711 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-203ENST00000343508 USP16Q9Y5T5 823 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 PTCH1Q13635 1447 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 KIF5AQ12840 1032 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 CUL4AQ13619 759 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 TRIM14Q14142 442 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 THEMISQ8N1K5 641 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-203ENST00000343508 C17orf53Q8N3J3 647 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-203ENST00000343508 PHACTR3Q96KR7 559 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 ALG1Q9BT22 464 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 CNNM2Q9H8M5 875 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 PSDA5PKW4 1024 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-203ENST00000343508 ZSCAN26Q16670 478 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 NLRP2Q9NX02 1062 aa5.46□□□□□ -1.54
CSMD3-203ENST00000343508 CHPF2Q9P2E5 772 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms