RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 ALG1Q9BT22 464 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 BRMS1Q9HCU9 246 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 PRC1O43663 620 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 NEMFO60524 1076 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 ELF2Q15723 593 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 BEND3Q5T5X7 828 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 IL25Q9H293 177 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 MADDQ8WXG6 1647 aa14.39□□□□□ -0.11
SNRNP48-201ENST00000342415 TRIM34Q9BYJ4 488 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 CLSTN2Q9H4D0 955 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 RAI14Q9P0K7 980 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 SLC12A7Q9Y666 1083 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 SLU7O95391 586 aaKnown RBP14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 AFMP43652 599 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 TERF1P54274 439 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 CWC25Q9NXE8 425 aaPredicted RBP14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 STAP2Q9UGK3 403 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 CASQ1P31415 396 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 TMEM67Q5HYA8 995 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 UTP14AQ9BVJ6 771 aaKnown RBP14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 NACAP1Q9BZK3 213 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 DDX21Q9NR30 783 aaKnown RBP eCLIP14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 RGS12O14924 1447 aa14.38□□□□□ -0.11
SNRNP48-201ENST00000342415 KIF2AO00139 706 aaPredicted RBP14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 EPB41L2O43491 1005 aaKnown RBP14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 ZSCAN25Q6NSZ9 544 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 ZNF589Q86UQ0 364 aaPredicted RBP14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 IFNL2Q8IZJ0 200 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 PLXNC1O60486 1568 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 PTCH1Q13635 1447 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 NCOA7Q8NI08 942 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 ORAI2Q96SN7 254 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 NOL10Q9BSC4 688 aaKnown RBP14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 ZSWIM6Q9HCJ5 1215 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 STX17P56962 302 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 NAA30Q147X3 362 aaPredicted RBP14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 KARSQ15046 597 aaKnown RBP14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 CCDC70Q6NSX1 233 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 SMARCE1Q969G3 411 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 CDC42BPBQ9Y5S2 1711 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 CROCC2H7BZ55 1655 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 SBNO1A3KN83 1393 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 TNNI3KQ59H18 835 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 CCDC102BQ68D86 513 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 CCDC12Q8WUD4 166 aaPredicted RBP14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 USP28Q96RU2 1077 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 FPGT-TNNI3KV9GXZ4 949 aa14.37□□□□□ -0.11
SNRNP48-201ENST00000342415 ZSCAN12O43309 604 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 SLFNL1Q499Z3 407 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 SLC9C2Q5TAH2 1124 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 SAMD1Q6SPF0 538 aaPredicted RBP14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 KIF24Q5T7B8 1368 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 CAVIN2O95810 425 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 MCM6Q14566 821 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 LEKR1Q6ZMV7 388 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 BICDL1Q6ZP65 573 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 TRMT112Q9UI30 125 aaKnown RBP14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 NUTM2BA6NNL0 878 aaPredicted RBP14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 NUTM2EB1AL46 878 aaPredicted RBP14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 G3V3G9 751 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 RANBP6O60518 1105 aaKnown RBP14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 DCAF8Q5TAQ9 597 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 NUTM2AQ8IVF1 878 aaPredicted RBP14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 SMAP1Q8IYB5 467 aaPredicted RBP14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 IP6K1Q92551 441 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 PDLIM2Q96JY6 352 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 AKAP2Q9Y2D5 859 aa14.36□□□□□ -0.11
SNRNP48-201ENST00000342415 CYP2E1P05181 493 aaPredicted RBP14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 DNA2P51530 1060 aa14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 ARID5BQ14865 1188 aa14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 ZKSCAN3Q9BRR0 538 aa14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 ZNF215Q9UL58 517 aaPredicted RBP14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 MRVI1Q9Y6F6 885 aa14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 MAP3K4Q9Y6R4 1608 aa14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 DDIT3P35638 169 aa14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 MYL10Q9BUA6 226 aa14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 FAM160A1Q05DH4 1040 aa14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 ZNF790Q6PG37 636 aa14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 PI4K2BQ8TCG2 481 aa14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 ZNF496Q96IT1 587 aaPredicted RBP14.35□□□□□ -0.11
SNRNP48-201ENST00000342415 BMS1Q14692 1282 aaKnown RBP14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 KCNG4Q8TDN1 519 aa14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 CACTINQ8WUQ7 758 aaKnown RBP14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 LZTFL1Q9NQ48 299 aa14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 PLEKHG3A1L390 1219 aa14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 DHX37Q8IY37 1157 aaKnown RBP14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 RUFY1Q96T51 708 aa14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 DACH1Q9UI36 760 aa14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 KIAA1524Q8TCG1 905 aa14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 CCDC47Q96A33 483 aaKnown RBP14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 AOX1Q06278 1338 aa14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 LMAN1P49257 510 aa14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 FAM89AQ96GI7 184 aa14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 AK7Q96M32 723 aa14.34□□□□□ -0.11
SNRNP48-201ENST00000342415 ZFYVE16Q7Z3T8 1539 aa14.33□□□□□ -0.11
SNRNP48-201ENST00000342415 AK9Q5TCS8 1911 aa14.33□□□□□ -0.11
SNRNP48-201ENST00000342415 PHACTR2O75167 634 aa14.33□□□□□ -0.12
SNRNP48-201ENST00000342415 GIGYF1O75420 1035 aaPredicted RBP14.33□□□□□ -0.12
SNRNP48-201ENST00000342415 SSRP1Q08945 709 aaKnown RBP14.33□□□□□ -0.12
SNRNP48-201ENST00000342415 GCKRQ14397 625 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms