RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 PLCH1Q4KWH8 1693 aa13.94□□□□□ -0.18
RTN3-203ENST00000341307 PNMA6EA0A0J9YXQ4 647 aa13.94□□□□□ -0.18
RTN3-203ENST00000341307 ST18O60284 1047 aa13.94□□□□□ -0.18
RTN3-203ENST00000341307 GIGYF1O75420 1035 aaPredicted RBP13.94□□□□□ -0.18
RTN3-203ENST00000341307 NBPF20Q3BBV1 942 aa13.94□□□□□ -0.18
RTN3-203ENST00000341307 PLEKHM2Q8IWE5 1019 aa13.94□□□□□ -0.18
RTN3-203ENST00000341307 USP44Q9H0E7 712 aa13.94□□□□□ -0.18
RTN3-203ENST00000341307 MED4Q9NPJ6 270 aa13.94□□□□□ -0.18
RTN3-203ENST00000341307 CWC15Q9P013 229 aaKnown RBP13.94□□□□□ -0.18
RTN3-203ENST00000341307 TRPC5Q9UL62 973 aaPredicted RBP13.94□□□□□ -0.18
RTN3-203ENST00000341307 SOS1Q07889 1333 aaPredicted RBP13.94□□□□□ -0.18
RTN3-203ENST00000341307 KDM6AO15550 1401 aaPredicted RBP13.93□□□□□ -0.18
RTN3-203ENST00000341307 COL5A2P05997 1499 aaPredicted RBP13.93□□□□□ -0.18
RTN3-203ENST00000341307 SRCAPQ6ZRS2 3230 aa13.93□□□□□ -0.18
RTN3-203ENST00000341307 A0A0G2JS52 829 aa13.93□□□□□ -0.18
RTN3-203ENST00000341307 PI4KAP2A4QPH2 592 aa13.93□□□□□ -0.18
RTN3-203ENST00000341307 GSPT1P15170 499 aaKnown RBP13.93□□□□□ -0.18
RTN3-203ENST00000341307 PHKG2P15735 406 aa13.93□□□□□ -0.18
RTN3-203ENST00000341307 FOXD4L6Q3SYB3 417 aaPredicted RBP13.93□□□□□ -0.18
RTN3-203ENST00000341307 FOXD4L3Q6VB84 417 aaPredicted RBP13.93□□□□□ -0.18
RTN3-203ENST00000341307 PI4KAP1Q8N8J0 262 aa13.93□□□□□ -0.18
RTN3-203ENST00000341307 NRBP1Q9UHY1 535 aa13.93□□□□□ -0.18
RTN3-203ENST00000341307 ZSCAN25Q6NSZ9 544 aa13.93□□□□□ -0.18
RTN3-203ENST00000341307 CCDC91Q7Z6B0 441 aa13.93□□□□□ -0.18
RTN3-203ENST00000341307 SGSM3Q96HU1 749 aa13.93□□□□□ -0.18
RTN3-203ENST00000341307 UBXN6Q9BZV1 441 aa13.93□□□□□ -0.18
RTN3-203ENST00000341307 NPHP1O15259 732 aa13.92□□□□□ -0.18
RTN3-203ENST00000341307 CYP27B1O15528 508 aa13.92□□□□□ -0.18
RTN3-203ENST00000341307 ZRANB2O95218 330 aaKnown RBP eCLIP13.92□□□□□ -0.18
RTN3-203ENST00000341307 RXRBP28702 533 aa13.92□□□□□ -0.18
RTN3-203ENST00000341307 MAGEA9P43362 315 aa13.92□□□□□ -0.18
RTN3-203ENST00000341307 TPM4P67936 248 aa13.92□□□□□ -0.18
RTN3-203ENST00000341307 SWT1Q5T5J6 900 aaKnown RBP13.92□□□□□ -0.18
RTN3-203ENST00000341307 GOLGA5Q8TBA6 731 aa13.92□□□□□ -0.18
RTN3-203ENST00000341307 FAM212AQ96EL1 285 aa13.92□□□□□ -0.18
RTN3-203ENST00000341307 DEF6Q9H4E7 631 aa13.92□□□□□ -0.18
RTN3-203ENST00000341307 TDO2P48775 406 aa13.92□□□□□ -0.18
RTN3-203ENST00000341307 REXO1L1PQ8IX06 675 aa13.92□□□□□ -0.18
RTN3-203ENST00000341307 VPS72Q15906 364 aa13.91□□□□□ -0.18
RTN3-203ENST00000341307 SUGP1Q8IWZ8 645 aaKnown RBP13.91□□□□□ -0.18
RTN3-203ENST00000341307 IQUBQ8NA54 791 aa13.91□□□□□ -0.18
RTN3-203ENST00000341307 SPG7Q9UQ90 795 aa13.91□□□□□ -0.18
RTN3-203ENST00000341307 COL14A1Q05707 1796 aaKnown RBP13.91□□□□□ -0.18
RTN3-203ENST00000341307 USP27XA6NNY8 438 aa13.91□□□□□ -0.18
RTN3-203ENST00000341307 GOLIM4O00461 696 aa13.91□□□□□ -0.18
RTN3-203ENST00000341307 SLU7O95391 586 aaKnown RBP13.91□□□□□ -0.18
RTN3-203ENST00000341307 GNAI3P08754 354 aa13.91□□□□□ -0.18
RTN3-203ENST00000341307 HOXB7P09629 217 aa13.91□□□□□ -0.18
RTN3-203ENST00000341307 NBPF7P0C2Y1 421 aaPredicted RBP13.91□□□□□ -0.18
RTN3-203ENST00000341307 RNF20Q5VTR2 975 aa13.91□□□□□ -0.18
RTN3-203ENST00000341307 NYAP1Q6ZVC0 841 aa13.91□□□□□ -0.18
RTN3-203ENST00000341307 SLC52A2Q9HAB3 445 aa13.91□□□□□ -0.18
RTN3-203ENST00000341307 ZCCHC17Q9NP64 241 aaKnown RBP13.91□□□□□ -0.18
RTN3-203ENST00000341307 ATRNO75882 1429 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 SPATA31A5Q5VU36 1347 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 SPATA31A7Q8IWB4 1347 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 ERCC6LQ2NKX8 1250 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 GIMAP6Q6P9H5 292 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 SIPA1L3O60292 1781 aaPredicted RBP13.9□□□□□ -0.18
RTN3-203ENST00000341307 ADCY9O60503 1353 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 SPATA31A1Q5TZJ5 1347 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 WDR17Q8IZU2 1322 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 CACNA1FO60840 1977 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 HMMRO75330 724 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 ZNF790Q6PG37 636 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 IFNL2Q8IZJ0 200 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 TMEM87AQ8NBN3 555 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 DNAAF4Q8WXU2 420 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 SRCIN1Q9C0H9 1055 aa13.9□□□□□ -0.18
RTN3-203ENST00000341307 DBF4Q9UBU7 674 aaPredicted RBP13.9□□□□□ -0.18
RTN3-203ENST00000341307 OVOS2A0A0G2JMS6 1433 aa13.89□□□□□ -0.19
RTN3-203ENST00000341307 UBTFL1P0CB47 393 aaPredicted RBP13.89□□□□□ -0.19
RTN3-203ENST00000341307 PIP4K2AP48426 406 aaPredicted RBP13.89□□□□□ -0.19
RTN3-203ENST00000341307 AIMP1Q12904 312 aaKnown RBP13.89□□□□□ -0.19
RTN3-203ENST00000341307 TSHZ3Q63HK5 1081 aa13.89□□□□□ -0.19
RTN3-203ENST00000341307 TMX3Q96JJ7 454 aa13.89□□□□□ -0.19
RTN3-203ENST00000341307 HEG1Q9ULI3 1381 aa13.89□□□□□ -0.19
RTN3-203ENST00000341307 MCCP23508 829 aa13.89□□□□□ -0.19
RTN3-203ENST00000341307 GPS2Q13227 327 aa13.89□□□□□ -0.19
RTN3-203ENST00000341307 NOM1Q5C9Z4 860 aaKnown RBP13.89□□□□□ -0.19
RTN3-203ENST00000341307 BEND3Q5T5X7 828 aa13.89□□□□□ -0.19
RTN3-203ENST00000341307 LRRN4CLQ8ND94 238 aa13.89□□□□□ -0.19
RTN3-203ENST00000341307 MNS1Q8NEH6 495 aa13.89□□□□□ -0.19
RTN3-203ENST00000341307 CACTINQ8WUQ7 758 aaKnown RBP13.89□□□□□ -0.19
RTN3-203ENST00000341307 RAI14Q9P0K7 980 aa13.89□□□□□ -0.19
RTN3-203ENST00000341307 GLI3P10071 1580 aa13.88□□□□□ -0.19
RTN3-203ENST00000341307 MAP2K1Q02750 393 aaPredicted RBP13.88□□□□□ -0.19
RTN3-203ENST00000341307 TTC22Q5TAA0 569 aa13.88□□□□□ -0.19
RTN3-203ENST00000341307 MCTP2Q6DN12 878 aa13.88□□□□□ -0.19
RTN3-203ENST00000341307 MAP3K2Q9Y2U5 619 aa13.88□□□□□ -0.19
RTN3-203ENST00000341307 NRAPQ86VF7 1730 aa13.88□□□□□ -0.19
RTN3-203ENST00000341307 ATP8B2P98198 1209 aa13.88□□□□□ -0.19
RTN3-203ENST00000341307 ZNF496Q96IT1 587 aaPredicted RBP13.88□□□□□ -0.19
RTN3-203ENST00000341307 PXDNLA1KZ92 1463 aa13.88□□□□□ -0.19
RTN3-203ENST00000341307 ADAMTS7Q9UKP4 1686 aa13.88□□□□□ -0.19
RTN3-203ENST00000341307 MYL6BP14649 208 aa13.87□□□□□ -0.19
RTN3-203ENST00000341307 OAS2P29728 719 aaKnown RBP13.87□□□□□ -0.19
RTN3-203ENST00000341307 CWF19L2Q2TBE0 894 aaKnown RBP13.87□□□□□ -0.19
RTN3-203ENST00000341307 TPRNQ4KMQ1 711 aa13.87□□□□□ -0.19
RTN3-203ENST00000341307 SEPT12Q8IYM1 358 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms