RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 PALD1Q9ULE6 856 aa16.19■□□□□ 0.18
HMGB1-202ENST00000339872 RTL9Q8NET4 1388 aa16.19■□□□□ 0.18
HMGB1-202ENST00000339872 IFIT1P09914 478 aaKnown RBP16.19■□□□□ 0.18
HMGB1-202ENST00000339872 GTF2E1P29083 439 aaPredicted RBP16.19■□□□□ 0.18
HMGB1-202ENST00000339872 SETDB2Q96T68 719 aa16.19■□□□□ 0.18
HMGB1-202ENST00000339872 A0A0D9SFI3 127 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 RFC4P35249 363 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 CCDC158Q5M9N0 1113 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 TTC39AQ5SRH9 613 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 TRAPPC3LQ5T215 181 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 VGLL2Q8N8G2 317 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 MPHOSPH8Q99549 860 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 PAG1Q9NWQ8 432 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 RFX7Q2KHR2 1363 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 GOLIM4O00461 696 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 ANAPC15P60006 121 aa16.18■□□□□ 0.18
HMGB1-202ENST00000339872 MROH5Q6ZUA9 1318 aa16.17■□□□□ 0.18
HMGB1-202ENST00000339872 ARAP2Q8WZ64 1704 aa16.17■□□□□ 0.18
HMGB1-202ENST00000339872 K7ELQ4 463 aaPredicted RBP16.17■□□□□ 0.18
HMGB1-202ENST00000339872 PDE8BO95263 885 aa16.17■□□□□ 0.18
HMGB1-202ENST00000339872 HSPA4P34932 840 aa16.17■□□□□ 0.18
HMGB1-202ENST00000339872 SLC27A3Q5K4L6 730 aa16.17■□□□□ 0.18
HMGB1-202ENST00000339872 NYXQ9GZU5 481 aa16.17■□□□□ 0.18
HMGB1-202ENST00000339872 ABCC12Q96J65 1359 aa16.17■□□□□ 0.18
HMGB1-202ENST00000339872 ST18O60284 1047 aa16.17■□□□□ 0.18
HMGB1-202ENST00000339872 NBPF5PQ86XG9 351 aaPredicted RBP16.17■□□□□ 0.18
HMGB1-202ENST00000339872 KBTBD3Q8NAB2 608 aa16.17■□□□□ 0.18
HMGB1-202ENST00000339872 COL4A1P02462 1669 aa16.16■□□□□ 0.18
HMGB1-202ENST00000339872 IGHMBP2P38935 993 aaKnown RBP16.16■□□□□ 0.18
HMGB1-202ENST00000339872 NBR1Q14596 966 aa16.16■□□□□ 0.18
HMGB1-202ENST00000339872 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.16■□□□□ 0.18
HMGB1-202ENST00000339872 CCDC171Q6TFL3 1326 aa16.16■□□□□ 0.18
HMGB1-202ENST00000339872 TAF1P21675 1872 aa16.16■□□□□ 0.18
HMGB1-202ENST00000339872 PTH1RQ03431 593 aa16.16■□□□□ 0.18
HMGB1-202ENST00000339872 C3orf67Q6ZVT6 689 aa16.16■□□□□ 0.18
HMGB1-202ENST00000339872 HELBQ8NG08 1087 aaPredicted RBP16.16■□□□□ 0.18
HMGB1-202ENST00000339872 ANTXR1Q9H6X2 564 aa16.16■□□□□ 0.18
HMGB1-202ENST00000339872 MED23Q9ULK4 1368 aa16.16■□□□□ 0.18
HMGB1-202ENST00000339872 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.15■□□□□ 0.18
HMGB1-202ENST00000339872 ADRA2BP18089 450 aa16.14■□□□□ 0.18
HMGB1-202ENST00000339872 PUM3Q15397 648 aaKnown RBP16.14■□□□□ 0.18
HMGB1-202ENST00000339872 CDC5LQ99459 802 aaKnown RBP16.14■□□□□ 0.18
HMGB1-202ENST00000339872 SNRKQ9NRH2 765 aa16.14■□□□□ 0.18
HMGB1-202ENST00000339872 CHGBP05060 677 aa16.14■□□□□ 0.17
HMGB1-202ENST00000339872 HSP90AA1P07900 732 aaKnown RBP16.14■□□□□ 0.17
HMGB1-202ENST00000339872 NEK4P51957 841 aa16.14■□□□□ 0.17
HMGB1-202ENST00000339872 FKBP4Q02790 459 aaKnown RBP eCLIP16.14■□□□□ 0.17
HMGB1-202ENST00000339872 SF3B3Q15393 1217 aaKnown RBP16.14■□□□□ 0.17
HMGB1-202ENST00000339872 A0A1B0GUL6 1792 aa16.13■□□□□ 0.17
HMGB1-202ENST00000339872 RXRBP28702 533 aa16.13■□□□□ 0.17
HMGB1-202ENST00000339872 SCARF1Q14162 830 aa16.13■□□□□ 0.17
HMGB1-202ENST00000339872 SLC10A5Q5PT55 438 aa16.13■□□□□ 0.17
HMGB1-202ENST00000339872 TPTE2Q6XPS3 522 aa16.13■□□□□ 0.17
HMGB1-202ENST00000339872 ZNF589Q86UQ0 364 aaPredicted RBP16.13■□□□□ 0.17
HMGB1-202ENST00000339872 IL17RAQ96F46 866 aa16.13■□□□□ 0.17
HMGB1-202ENST00000339872 AKAP11Q9UKA4 1901 aa16.13■□□□□ 0.17
HMGB1-202ENST00000339872 TAF5LO75529 589 aa16.13■□□□□ 0.17
HMGB1-202ENST00000339872 LPIN2Q92539 896 aa16.13■□□□□ 0.17
HMGB1-202ENST00000339872 SNX14Q9Y5W7 946 aa16.13■□□□□ 0.17
HMGB1-202ENST00000339872 CARMIL3Q8ND23 1372 aa16.12■□□□□ 0.17
HMGB1-202ENST00000339872 NPHP1O15259 732 aa16.12■□□□□ 0.17
HMGB1-202ENST00000339872 TXNRD1Q16881 649 aa16.12■□□□□ 0.17
HMGB1-202ENST00000339872 CCDC24Q8N4L8 307 aa16.12■□□□□ 0.17
HMGB1-202ENST00000339872 MYH7P12883 1935 aa16.12■□□□□ 0.17
HMGB1-202ENST00000339872 FGFR2P21802 821 aa16.12■□□□□ 0.17
HMGB1-202ENST00000339872 KCNJ4P48050 445 aa16.12■□□□□ 0.17
HMGB1-202ENST00000339872 ANKRD18AQ8IVF6 992 aa16.12■□□□□ 0.17
HMGB1-202ENST00000339872 RBM8AQ9Y5S9 174 aaKnown RBP16.12■□□□□ 0.17
HMGB1-202ENST00000339872 TNRC6CQ9HCJ0 1690 aaKnown RBP16.12■□□□□ 0.17
HMGB1-202ENST00000339872 SLC5A1P13866 664 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 PRPF40BQ6NWY9 871 aaKnown RBP16.11■□□□□ 0.17
HMGB1-202ENST00000339872 PI16Q6UXB8 463 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 RASEFQ8IZ41 740 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 NLRP3Q96P20 1036 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 SEC62Q99442 399 aaKnown RBP16.11■□□□□ 0.17
HMGB1-202ENST00000339872 UPF3BQ9BZI7 483 aaKnown RBP16.11■□□□□ 0.17
HMGB1-202ENST00000339872 FOXD4L1Q9NU39 408 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 SNAP23O00161 211 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 SSFA2P28290 1259 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 MCAMP43121 646 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 ZAP70P43403 619 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 CHRNDQ07001 517 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 NFIXQ14938 502 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 PROM2Q8N271 834 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 MAP4K1Q92918 833 aa16.11■□□□□ 0.17
HMGB1-202ENST00000339872 PHKA1P46020 1223 aa16.1■□□□□ 0.17
HMGB1-202ENST00000339872 MCMDC2Q4G0Z9 681 aa16.1■□□□□ 0.17
HMGB1-202ENST00000339872 CCDC102BQ68D86 513 aa16.1■□□□□ 0.17
HMGB1-202ENST00000339872 CCDC129Q6ZRS4 1044 aa16.1■□□□□ 0.17
HMGB1-202ENST00000339872 NECTIN1Q15223 517 aa16.1■□□□□ 0.17
HMGB1-202ENST00000339872 SLFNL1Q499Z3 407 aa16.1■□□□□ 0.17
HMGB1-202ENST00000339872 TICAM2Q86XR7 235 aa16.1■□□□□ 0.17
HMGB1-202ENST00000339872 ZNF512BQ96KM6 892 aaPredicted RBP16.1■□□□□ 0.17
HMGB1-202ENST00000339872 APBA3O96018 575 aa16.09■□□□□ 0.17
HMGB1-202ENST00000339872 RNF113AO15541 343 aaKnown RBP16.08■□□□□ 0.17
HMGB1-202ENST00000339872 GYS1P13807 737 aa16.08■□□□□ 0.17
HMGB1-202ENST00000339872 ARID4AP29374 1257 aaPredicted RBP16.08■□□□□ 0.17
HMGB1-202ENST00000339872 ZMYM1Q5SVZ6 1142 aa16.08■□□□□ 0.17
HMGB1-202ENST00000339872 CELF1Q92879 486 aaKnown RBP16.08■□□□□ 0.17
HMGB1-202ENST00000339872 HELLSQ9NRZ9 838 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 164.6 ms