RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 DHX37Q8IY37 1157 aaKnown RBP6.72□□□□□ -1.33
CSDE1-202ENST00000339438 DIAPH3Q9NSV4 1193 aa6.72□□□□□ -1.33
CSDE1-202ENST00000339438 POLR2AP24928 1970 aaKnown RBP6.72□□□□□ -1.33
CSDE1-202ENST00000339438 KDM4AO75164 1064 aa6.72□□□□□ -1.33
CSDE1-202ENST00000339438 MBD3O95983 291 aa6.72□□□□□ -1.33
CSDE1-202ENST00000339438 RABEP1Q15276 862 aa6.72□□□□□ -1.33
CSDE1-202ENST00000339438 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.72□□□□□ -1.33
CSDE1-202ENST00000339438 CALCOCO1Q9P1Z2 691 aa6.72□□□□□ -1.33
CSDE1-202ENST00000339438 RPAP1Q9BWH6 1393 aaPredicted RBP6.71□□□□□ -1.33
CSDE1-202ENST00000339438 SMARCA5O60264 1052 aaPredicted RBP6.71□□□□□ -1.34
CSDE1-202ENST00000339438 GIGYF1O75420 1035 aaPredicted RBP6.71□□□□□ -1.34
CSDE1-202ENST00000339438 TMEM57Q8N5G2 664 aa6.71□□□□□ -1.34
CSDE1-202ENST00000339438 SLC51AQ86UW1 340 aa6.71□□□□□ -1.34
CSDE1-202ENST00000339438 KRT222Q8N1A0 295 aa6.71□□□□□ -1.34
CSDE1-202ENST00000339438 FAM184AQ8NB25 1140 aa6.71□□□□□ -1.34
CSDE1-202ENST00000339438 TMEM87AQ8NBN3 555 aa6.71□□□□□ -1.34
CSDE1-202ENST00000339438 UBXN6Q9BZV1 441 aa6.71□□□□□ -1.34
CSDE1-202ENST00000339438 DDX19BQ9UMR2 479 aa6.71□□□□□ -1.34
CSDE1-202ENST00000339438 ABCC12Q96J65 1359 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 SMTNL1A8MU46 457 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 NFE2L2Q16236 605 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 ATF7IPQ6VMQ6 1270 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 CREBRFQ8IUR6 639 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 IFNL2Q8IZJ0 200 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 SSH1Q8WYL5 1049 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 DHX16O60231 1041 aaKnown RBP6.7□□□□□ -1.34
CSDE1-202ENST00000339438 TMPOP42166 694 aaKnown RBP6.7□□□□□ -1.34
CSDE1-202ENST00000339438 ZNF34Q8IZ26 560 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 RUNDC1Q96C34 613 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 TSPYL1Q9H0U9 437 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 FHOD1Q9Y613 1164 aa6.7□□□□□ -1.34
CSDE1-202ENST00000339438 PTPRCP08575 1304 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 PTMAP06454 111 aaKnown RBP6.69□□□□□ -1.34
CSDE1-202ENST00000339438 U2AF1L5P0DN76 240 aaPredicted RBP6.69□□□□□ -1.34
CSDE1-202ENST00000339438 U2AF1Q01081 240 aaKnown RBP eCLIP6.69□□□□□ -1.34
CSDE1-202ENST00000339438 CUL4AQ13619 759 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 MUM1L1Q5H9M0 696 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 FBXO38Q6PIJ6 1188 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 LCMT1Q9UIC8 334 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 COL1A1P02452 1464 aaPredicted RBP6.69□□□□□ -1.34
CSDE1-202ENST00000339438 REC8O95072 547 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 CT47B1P0C2W7 299 aaPredicted RBP6.69□□□□□ -1.34
CSDE1-202ENST00000339438 LTV1Q96GA3 475 aaPredicted RBP6.69□□□□□ -1.34
CSDE1-202ENST00000339438 KAZALD1Q96I82 304 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 DOCK1Q14185 1865 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 LOC102724159A0A0B4J2E5 919 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 ERICH4A6NGS2 130 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 POTECB2RU33 542 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 HOXB7P09629 217 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 PWP2Q15269 919 aaKnown RBP6.69□□□□□ -1.34
CSDE1-202ENST00000339438 SLFNL1Q499Z3 407 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 SULT6B1Q6IMI4 303 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 ZNF790Q6PG37 636 aa6.69□□□□□ -1.34
CSDE1-202ENST00000339438 LOC102724428A0A0B4J2F2 783 aa6.68□□□□□ -1.34
CSDE1-202ENST00000339438 ZBTB7BO15156 539 aaPredicted RBP6.68□□□□□ -1.34
CSDE1-202ENST00000339438 DIAPH1O60610 1272 aaKnown RBP6.68□□□□□ -1.34
CSDE1-202ENST00000339438 HCLS1P14317 486 aaPredicted RBP6.68□□□□□ -1.34
CSDE1-202ENST00000339438 SIK1P57059 783 aa6.68□□□□□ -1.34
CSDE1-202ENST00000339438 MYCNP04198 464 aaPredicted RBP6.68□□□□□ -1.34
CSDE1-202ENST00000339438 H2AFXP16104 143 aaPredicted RBP6.68□□□□□ -1.34
CSDE1-202ENST00000339438 ADRA2BP18089 450 aa6.68□□□□□ -1.34
CSDE1-202ENST00000339438 IL17RAQ96F46 866 aa6.68□□□□□ -1.34
CSDE1-202ENST00000339438 NOB1Q9ULX3 412 aaKnown RBP6.68□□□□□ -1.34
CSDE1-202ENST00000339438 MKI67P46013 3256 aaKnown RBP6.68□□□□□ -1.34
CSDE1-202ENST00000339438 SLC10A5Q5PT55 438 aa6.68□□□□□ -1.34
CSDE1-202ENST00000339438 TOM1L2Q6ZVM7 507 aa6.68□□□□□ -1.34
CSDE1-202ENST00000339438 PLEKHM2Q8IWE5 1019 aa6.68□□□□□ -1.34
CSDE1-202ENST00000339438 ZSWIM8A7E2V4 1837 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 CDC45O75419 566 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 RPS6KA4O75676 772 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 HMOX1P09601 288 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 YBX3P16989 372 aaKnown RBP eCLIP6.67□□□□□ -1.349e-10■■□□□ 13.4
CSDE1-202ENST00000339438 PLA2G4AP47712 749 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 GYS2P54840 703 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 USP48Q86UV5 1035 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 ZNF397Q8NF99 534 aaPredicted RBP6.67□□□□□ -1.34
CSDE1-202ENST00000339438 HDAC5Q9UQL6 1122 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 RFX7Q2KHR2 1363 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 EXOC5O00471 708 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 RSPH14Q9UHP6 348 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 LTBP3Q9NS15 1303 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 NYAP1Q6ZVC0 841 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 TSR2Q969E8 191 aaKnown RBP6.67□□□□□ -1.34
CSDE1-202ENST00000339438 ZNF496Q96IT1 587 aaPredicted RBP6.67□□□□□ -1.34
CSDE1-202ENST00000339438 TRERF1Q96PN7 1200 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 ALPK3Q96L96 1907 aa6.67□□□□□ -1.34
CSDE1-202ENST00000339438 TRIM66O15016 1216 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 CT47A1Q5JQC4 288 aaPredicted RBP6.66□□□□□ -1.34
CSDE1-202ENST00000339438 ITPRIPQ8IWB1 547 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 ZRANB2O95218 330 aaKnown RBP eCLIP6.66□□□□□ -1.34
CSDE1-202ENST00000339438 LRMPQ12912 555 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 SMIM5Q71RC9 77 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 GCC1Q96CN9 775 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 MX1P20591 662 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 PTGS1P23219 599 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 TMX3Q96JJ7 454 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 ZNF215Q9UL58 517 aaPredicted RBP6.66□□□□□ -1.34
CSDE1-202ENST00000339438 PAXBP1Q9Y5B6 917 aa6.66□□□□□ -1.34
CSDE1-202ENST00000339438 EXOSC9Q06265 439 aaKnown RBP6.66□□□□□ -1.34
CSDE1-202ENST00000339438 TRIM28Q13263 835 aaKnown RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms