RNA–Protein interactions for RNA: ENST00000339430.9

LITAF-201, Transcript of lipopolysaccharide induced TNF factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LITAF, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-201ENST00000339430 VPS53Q5VIR6 699 aa19.52■□□□□ 0.72
LITAF-201ENST00000339430 POTEAQ6S8J7 498 aa19.52■□□□□ 0.72
LITAF-201ENST00000339430 NDUFB9Q9Y6M9 179 aa19.52■□□□□ 0.72
LITAF-201ENST00000339430 COL5A3P25940 1745 aaPredicted RBP19.51■□□□□ 0.71
LITAF-201ENST00000339430 ZKSCAN1P17029 563 aaPredicted RBP19.51■□□□□ 0.71
LITAF-201ENST00000339430 RNF214Q8ND24 703 aa19.51■□□□□ 0.71
LITAF-201ENST00000339430 HIP1O00291 1037 aa19.51■□□□□ 0.71
LITAF-201ENST00000339430 DZIP3Q86Y13 1208 aaKnown RBP19.51■□□□□ 0.71
LITAF-201ENST00000339430 MAP4K1Q92918 833 aa19.51■□□□□ 0.71
LITAF-201ENST00000339430 A0A087WZG4 1122 aa19.5■□□□□ 0.71
LITAF-201ENST00000339430 GJB2P29033 226 aa19.5■□□□□ 0.71
LITAF-201ENST00000339430 TFCP2Q12800 502 aa19.5■□□□□ 0.71
LITAF-201ENST00000339430 HLFQ16534 295 aa19.5■□□□□ 0.71
LITAF-201ENST00000339430 NECAB1Q8N987 351 aa19.5■□□□□ 0.71
LITAF-201ENST00000339430 PTPN12Q05209 780 aaKnown RBP19.5■□□□□ 0.71
LITAF-201ENST00000339430 TCIRG1Q13488 830 aa19.5■□□□□ 0.71
LITAF-201ENST00000339430 KCNB2Q92953 911 aa19.5■□□□□ 0.71
LITAF-201ENST00000339430 TCEANC2Q96MN5 208 aa19.5■□□□□ 0.71
LITAF-201ENST00000339430 NAP1L5Q96NT1 182 aaPredicted RBP19.5■□□□□ 0.71
LITAF-201ENST00000339430 SLC27A2O14975 620 aa19.49■□□□□ 0.71
LITAF-201ENST00000339430 ME3Q16798 604 aa19.49■□□□□ 0.71
LITAF-201ENST00000339430 ZNF589Q86UQ0 364 aaPredicted RBP19.49■□□□□ 0.71
LITAF-201ENST00000339430 TM6SF1Q9BZW5 370 aa19.49■□□□□ 0.71
LITAF-201ENST00000339430 CWC25Q9NXE8 425 aaPredicted RBP19.49■□□□□ 0.71
LITAF-201ENST00000339430 DBNLQ9UJU6 430 aaKnown RBP19.49■□□□□ 0.71
LITAF-201ENST00000339430 TAF6LQ9Y6J9 622 aa19.49■□□□□ 0.71
LITAF-201ENST00000339430 RREB1Q92766 1687 aa19.49■□□□□ 0.71
LITAF-201ENST00000339430 RFX5P48382 616 aaPredicted RBP19.49■□□□□ 0.71
LITAF-201ENST00000339430 GIGYF2Q6Y7W6 1299 aaKnown RBP19.49■□□□□ 0.71
LITAF-201ENST00000339430 COPRSQ9NQ92 184 aa19.49■□□□□ 0.71
LITAF-201ENST00000339430 ST3GAL1Q11201 340 aa19.48■□□□□ 0.71
LITAF-201ENST00000339430 LY75O60449 1722 aa19.48■□□□□ 0.71
LITAF-201ENST00000339430 F13A1P00488 732 aa19.48■□□□□ 0.71
LITAF-201ENST00000339430 TNNI3KQ59H18 835 aa19.48■□□□□ 0.71
LITAF-201ENST00000339430 CCDC191Q8NCU4 936 aa19.48■□□□□ 0.71
LITAF-201ENST00000339430 ISCA1Q9BUE6 129 aa19.48■□□□□ 0.71
LITAF-201ENST00000339430 CHMP3Q9Y3E7 222 aa19.48■□□□□ 0.71
LITAF-201ENST00000339430 FPGT-TNNI3KV9GXZ4 949 aa19.48■□□□□ 0.71
LITAF-201ENST00000339430 FIBPO43427 364 aa19.47■□□□□ 0.71
LITAF-201ENST00000339430 CHGBP05060 677 aa19.47■□□□□ 0.71
LITAF-201ENST00000339430 SYAP1Q96A49 352 aaPredicted RBP19.47■□□□□ 0.71
LITAF-201ENST00000339430 TPCN1Q9ULQ1 816 aa19.47■□□□□ 0.71
LITAF-201ENST00000339430 CNTNAP4Q9C0A0 1308 aa19.46■□□□□ 0.71
LITAF-201ENST00000339430 ERVV-1B6SEH8 477 aa19.46■□□□□ 0.71
LITAF-201ENST00000339430 ZSCAN31Q96LW9 406 aaPredicted RBP19.46■□□□□ 0.71
LITAF-201ENST00000339430 DNAJC2Q99543 621 aaKnown RBP19.46■□□□□ 0.71
LITAF-201ENST00000339430 VPS37CA5D8V6 355 aaPredicted RBP19.46■□□□□ 0.71
LITAF-201ENST00000339430 GPTP24298 496 aa19.46■□□□□ 0.71
LITAF-201ENST00000339430 DBNDD2Q9BQY9 259 aa19.46■□□□□ 0.71
LITAF-201ENST00000339430 TSPY26PQ9H489 355 aa19.46■□□□□ 0.71
LITAF-201ENST00000339430 SH2B1Q9NRF2 756 aaPredicted RBP19.46■□□□□ 0.71
LITAF-201ENST00000339430 COL15A1P39059 1388 aa19.45■□□□□ 0.7
LITAF-201ENST00000339430 MED23Q9ULK4 1368 aa19.45■□□□□ 0.7
LITAF-201ENST00000339430 H7C1W4 665 aa19.45■□□□□ 0.7
LITAF-201ENST00000339430 RABL6Q3YEC7 729 aaPredicted RBP19.45■□□□□ 0.7
LITAF-201ENST00000339430 LMBR1LQ6UX01 489 aa19.45■□□□□ 0.7
LITAF-201ENST00000339430 SMIM5Q71RC9 77 aa19.45■□□□□ 0.7
LITAF-201ENST00000339430 CASP7P55210 303 aa19.44■□□□□ 0.7
LITAF-201ENST00000339430 TRIM28Q13263 835 aaKnown RBP19.44■□□□□ 0.7
LITAF-201ENST00000339430 HSP90AB3PQ58FF7 597 aa19.44■□□□□ 0.7
LITAF-201ENST00000339430 ZSCAN30Q86W11 494 aa19.44■□□□□ 0.7
LITAF-201ENST00000339430 SNRKQ9NRH2 765 aa19.44■□□□□ 0.7
LITAF-201ENST00000339430 LRRC4BQ9NT99 713 aa19.44■□□□□ 0.7
LITAF-201ENST00000339430 MTMR6Q9Y217 621 aa19.44■□□□□ 0.7
LITAF-201ENST00000339430 ATP5JP18859 108 aa19.44■□□□□ 0.7
LITAF-201ENST00000339430 BLOC1S2Q6QNY1 142 aa19.44■□□□□ 0.7
LITAF-201ENST00000339430 PDLIM2Q96JY6 352 aa19.44■□□□□ 0.7
LITAF-201ENST00000339430 NUP98P52948 1817 aa19.44■□□□□ 0.7
LITAF-201ENST00000339430 PSMA5P28066 241 aa19.43■□□□□ 0.7
LITAF-201ENST00000339430 DNM1Q05193 864 aaKnown RBP19.43■□□□□ 0.7
LITAF-201ENST00000339430 RC3H1Q5TC82 1133 aaKnown RBP19.43■□□□□ 0.7
LITAF-201ENST00000339430 RNF20Q5VTR2 975 aa19.43■□□□□ 0.7
LITAF-201ENST00000339430 CCDC129Q6ZRS4 1044 aa19.43■□□□□ 0.7
LITAF-201ENST00000339430 TMEM87AQ8NBN3 555 aa19.43■□□□□ 0.7
LITAF-201ENST00000339430 GNPATO15228 680 aa19.43■□□□□ 0.7
LITAF-201ENST00000339430 CAMTA2O94983 1202 aa19.43■□□□□ 0.7
LITAF-201ENST00000339430 SEC62Q99442 399 aaKnown RBP19.43■□□□□ 0.7
LITAF-201ENST00000339430 TAF5LO75529 589 aa19.42■□□□□ 0.7
LITAF-201ENST00000339430 MSNP26038 577 aaKnown RBP19.42■□□□□ 0.7
LITAF-201ENST00000339430 DDX46Q7L014 1031 aaKnown RBP19.42■□□□□ 0.7
LITAF-201ENST00000339430 TAF1LQ8IZX4 1826 aa19.42■□□□□ 0.7
LITAF-201ENST00000339430 NLRP10Q86W26 655 aa19.42■□□□□ 0.7
LITAF-201ENST00000339430 RPS6KA4O75676 772 aa19.41■□□□□ 0.7
LITAF-201ENST00000339430 RPS6KB1P23443 525 aa19.41■□□□□ 0.7
LITAF-201ENST00000339430 STK3Q13188 491 aa19.41■□□□□ 0.7
LITAF-201ENST00000339430 ATP6V1DQ9Y5K8 247 aa19.41■□□□□ 0.7
LITAF-201ENST00000339430 PHF14O94880 888 aa19.41■□□□□ 0.7
LITAF-201ENST00000339430 FAM89AQ96GI7 184 aa19.41■□□□□ 0.7
LITAF-201ENST00000339430 UBE2HP62256 183 aa19.4■□□□□ 0.7
LITAF-201ENST00000339430 FOXO4P98177 505 aa19.4■□□□□ 0.7
LITAF-201ENST00000339430 ZNF34Q8IZ26 560 aa19.4■□□□□ 0.7
LITAF-201ENST00000339430 NEUROD6Q96NK8 337 aa19.4■□□□□ 0.7
LITAF-201ENST00000339430 ANKRD36CQ5JPF3 1778 aa19.4■□□□□ 0.7
LITAF-201ENST00000339430 TOB2Q14106 344 aaPredicted RBP19.4■□□□□ 0.7
LITAF-201ENST00000339430 CCDC183Q5T5S1 534 aa19.4■□□□□ 0.7
LITAF-201ENST00000339430 LARP1BQ659C4 914 aaKnown RBP19.4■□□□□ 0.7
LITAF-201ENST00000339430 AMIGO3Q86WK7 504 aa19.4■□□□□ 0.7
LITAF-201ENST00000339430 ZNF609O15014 1411 aa19.4■□□□□ 0.7
LITAF-201ENST00000339430 UBN2Q6ZU65 1347 aa19.39■□□□□ 0.69
LITAF-201ENST00000339430 C4BP0C0L5 1744 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms