RNA–Protein interactions for RNA: ENST00000330588.4

SMG1-201, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5 BASIC

Gene SMG1, Length 1,588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-201ENST00000330588 GPBP1L1Q9HC44 474 aaPredicted RBP8.44□□□□□ -1.06
SMG1-201ENST00000330588 MYH14Q7Z406 1995 aaKnown RBP8.43□□□□□ -1.06
SMG1-201ENST00000330588 CLCN1P35523 988 aa8.43□□□□□ -1.06
SMG1-201ENST00000330588 ZEB1P37275 1124 aaPredicted RBP8.43□□□□□ -1.06
SMG1-201ENST00000330588 TRAPPC3LQ5T215 181 aa8.43□□□□□ -1.06
SMG1-201ENST00000330588 TEX13AQ9BXU3 409 aaPredicted RBP8.43□□□□□ -1.06
SMG1-201ENST00000330588 LGR6Q9HBX8 967 aa8.43□□□□□ -1.06
SMG1-201ENST00000330588 GMPR2Q9P2T1 348 aaKnown RBP8.43□□□□□ -1.06
SMG1-201ENST00000330588 CHD4Q14839 1912 aa8.42□□□□□ -1.06
SMG1-201ENST00000330588 PRKAR2BP31323 418 aa8.42□□□□□ -1.06
SMG1-201ENST00000330588 CRKLP46109 303 aaKnown RBP8.42□□□□□ -1.06
SMG1-201ENST00000330588 PDE4DQ08499 809 aa8.42□□□□□ -1.06
SMG1-201ENST00000330588 AMIGO3Q86WK7 504 aa8.42□□□□□ -1.06
SMG1-201ENST00000330588 TEFQ10587 303 aa8.41□□□□□ -1.06
SMG1-201ENST00000330588 IL17REQ8NFR9 667 aa8.41□□□□□ -1.06
SMG1-201ENST00000330588 REPIN1Q9BWE0 567 aaKnown RBP8.41□□□□□ -1.06
SMG1-201ENST00000330588 CCDC87Q9NVE4 849 aa8.41□□□□□ -1.06
SMG1-201ENST00000330588 HEG1Q9ULI3 1381 aa8.41□□□□□ -1.06
SMG1-201ENST00000330588 SOS1Q07889 1333 aaPredicted RBP8.41□□□□□ -1.06
SMG1-201ENST00000330588 USP42Q9H9J4 1324 aaKnown RBP8.41□□□□□ -1.06
SMG1-201ENST00000330588 GRIN3BO60391 1043 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 PTCD1O75127 700 aaKnown RBP8.4□□□□□ -1.06
SMG1-201ENST00000330588 NEFMP07197 916 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 U2AF1L5P0DN76 240 aaPredicted RBP8.4□□□□□ -1.06
SMG1-201ENST00000330588 CYP19A1P11511 503 aaPredicted RBP8.4□□□□□ -1.06
SMG1-201ENST00000330588 JUNDP17535 347 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 RFC4P35249 363 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 WNT7BP56706 349 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 SKOR1P84550 965 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 U2AF1Q01081 240 aaKnown RBP eCLIP8.4□□□□□ -1.06
SMG1-201ENST00000330588 GUCA2AQ02747 115 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 ZNF790Q6PG37 636 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 TTC5Q8N0Z6 440 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 C10orf71Q711Q0 1435 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 KIAA1551Q9HCM1 1747 aa8.4□□□□□ -1.06
SMG1-201ENST00000330588 MYBBP1AQ9BQG0 1328 aaKnown RBP8.4□□□□□ -1.07
SMG1-201ENST00000330588 J3QL48 77 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 GYS1P13807 737 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 TGFB2P61812 414 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 AMHR2Q16671 573 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 INTS5Q6P9B9 1019 aaKnown RBP8.39□□□□□ -1.07
SMG1-201ENST00000330588 PHACTR3Q96KR7 559 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 NRXN2Q9P2S2 1712 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 STARD3NLO95772 234 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 YY1P25490 414 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 MSL1Q68DK7 614 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 DNAJC10Q8IXB1 793 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 RTF1Q92541 710 aaKnown RBP8.39□□□□□ -1.07
SMG1-201ENST00000330588 FMNL2Q96PY5 1086 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 PLEKHF1Q96S99 279 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 SCN7AQ01118 1682 aa8.39□□□□□ -1.07
SMG1-201ENST00000330588 COL15A1P39059 1388 aa8.38□□□□□ -1.07
SMG1-201ENST00000330588 DLG5Q8TDM6 1919 aa8.38□□□□□ -1.07
SMG1-201ENST00000330588 LAMB4A4D0S4 1761 aa8.38□□□□□ -1.07
SMG1-201ENST00000330588 KDM3BQ7LBC6 1761 aa8.38□□□□□ -1.07
SMG1-201ENST00000330588 A0A087WZG4 1122 aa8.38□□□□□ -1.07
SMG1-201ENST00000330588 MMP10P09238 476 aa8.38□□□□□ -1.07
SMG1-201ENST00000330588 SLC39A6Q13433 755 aa8.38□□□□□ -1.07
SMG1-201ENST00000330588 RETREG3Q86VR2 466 aa8.38□□□□□ -1.07
SMG1-201ENST00000330588 PARP9Q8IXQ6 854 aa8.38□□□□□ -1.07
SMG1-201ENST00000330588 PNISRQ8TF01 805 aaKnown RBP8.38□□□□□ -1.07
SMG1-201ENST00000330588 SYMPKQ92797 1274 aaKnown RBP8.38□□□□□ -1.07
SMG1-201ENST00000330588 KDM4CQ9H3R0 1056 aa8.38□□□□□ -1.07
SMG1-201ENST00000330588 GPR162Q16538 588 aa8.37□□□□□ -1.07
SMG1-201ENST00000330588 CCDC24Q8N4L8 307 aa8.37□□□□□ -1.07
SMG1-201ENST00000330588 NLGN2Q8NFZ4 835 aa8.37□□□□□ -1.07
SMG1-201ENST00000330588 ZNF496Q96IT1 587 aaPredicted RBP8.37□□□□□ -1.07
SMG1-201ENST00000330588 ATP13A2Q9NQ11 1180 aa8.37□□□□□ -1.07
SMG1-201ENST00000330588 BABAM1Q9NWV8 329 aa8.37□□□□□ -1.07
SMG1-201ENST00000330588 NARFQ9UHQ1 456 aa8.37□□□□□ -1.07
SMG1-201ENST00000330588 PCDHGC3Q9UN70 934 aa8.37□□□□□ -1.07
SMG1-201ENST00000330588 PARP3Q9Y6F1 533 aa8.37□□□□□ -1.07
SMG1-201ENST00000330588 PXDNLA1KZ92 1463 aa8.37□□□□□ -1.07
SMG1-201ENST00000330588 BCORQ6W2J9 1755 aa8.37□□□□□ -1.07
SMG1-201ENST00000330588 BRCA1P38398 1863 aaKnown RBP8.37□□□□□ -1.07
SMG1-201ENST00000330588 BTBD11A6QL63 1104 aa8.36□□□□□ -1.07
SMG1-201ENST00000330588 TM4SF1P30408 202 aa8.36□□□□□ -1.07
SMG1-201ENST00000330588 IL6STP40189 918 aaPredicted RBP8.36□□□□□ -1.07
SMG1-201ENST00000330588 EIF5P55010 431 aaKnown RBP8.36□□□□□ -1.07
SMG1-201ENST00000330588 TAF7Q15545 349 aaPredicted RBP8.36□□□□□ -1.07
SMG1-201ENST00000330588 NFE2L2Q16236 605 aa8.36□□□□□ -1.07
SMG1-201ENST00000330588 TMEM132AQ24JP5 1023 aa8.36□□□□□ -1.07
SMG1-201ENST00000330588 LMOD3Q0VAK6 560 aa8.35□□□□□ -1.07
SMG1-201ENST00000330588 NUTM1Q86Y26 1132 aa8.35□□□□□ -1.07
SMG1-201ENST00000330588 HPS1Q92902 700 aa8.35□□□□□ -1.07
SMG1-201ENST00000330588 ZBTB1Q9Y2K1 713 aa8.35□□□□□ -1.07
SMG1-201ENST00000330588 ARFGEF1Q9Y6D6 1849 aa8.35□□□□□ -1.07
SMG1-201ENST00000330588 MAPK8IP3Q9UPT6 1336 aa8.35□□□□□ -1.07
SMG1-201ENST00000330588 POLRMTO00411 1230 aaKnown RBP8.35□□□□□ -1.07
SMG1-201ENST00000330588 SNRPA1P09661 255 aaKnown RBP8.35□□□□□ -1.07
SMG1-201ENST00000330588 NFX1Q12986 1120 aaKnown RBP8.35□□□□□ -1.07
SMG1-201ENST00000330588 DDX10Q13206 875 aaKnown RBP8.35□□□□□ -1.07
SMG1-201ENST00000330588 CNGB1Q14028 1251 aaPredicted RBP8.35□□□□□ -1.07
SMG1-201ENST00000330588 PTCRAQ6ISU1 281 aaPredicted RBP8.35□□□□□ -1.07
SMG1-201ENST00000330588 DLEC1Q9Y238 1755 aa8.34□□□□□ -1.07
SMG1-201ENST00000330588 SIAH2O43255 324 aa8.34□□□□□ -1.07
SMG1-201ENST00000330588 FDX1P10109 184 aa8.34□□□□□ -1.07
SMG1-201ENST00000330588 YBX3P16989 372 aaKnown RBP eCLIP8.34□□□□□ -1.07
SMG1-201ENST00000330588 CLEC4GQ6UXB4 293 aa8.34□□□□□ -1.07
SMG1-201ENST00000330588 SMIM5Q71RC9 77 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms