RNA–Protein interactions for RNA: ENST00000329553.2

RIPPLY3-201, Transcript of ripply transcriptional repressor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RIPPLY3, Length 2,235 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIPPLY3-201ENST00000329553 VGLL2Q8N8G2 317 aa24.48■■□□□ 1.51
RIPPLY3-201ENST00000329553 ANAPC15P60006 121 aa24.47■■□□□ 1.51
RIPPLY3-201ENST00000329553 ATP2B3Q16720 1220 aa24.47■■□□□ 1.51
RIPPLY3-201ENST00000329553 DDX46Q7L014 1031 aaKnown RBP24.47■■□□□ 1.51
RIPPLY3-201ENST00000329553 A0A0D9SFI3 127 aa24.46■■□□□ 1.51
RIPPLY3-201ENST00000329553 K7ELQ4 463 aaPredicted RBP24.46■■□□□ 1.51
RIPPLY3-201ENST00000329553 IFIT1P09914 478 aaKnown RBP24.46■■□□□ 1.51
RIPPLY3-201ENST00000329553 PTH1RQ03431 593 aa24.46■■□□□ 1.51
RIPPLY3-201ENST00000329553 PHF14O94880 888 aa24.46■■□□□ 1.51
RIPPLY3-201ENST00000329553 PDE8BO95263 885 aa24.46■■□□□ 1.51
RIPPLY3-201ENST00000329553 TRAPPC3LQ5T215 181 aa24.46■■□□□ 1.51
RIPPLY3-201ENST00000329553 GORABQ5T7V8 394 aa24.46■■□□□ 1.51
RIPPLY3-201ENST00000329553 SETDB2Q96T68 719 aa24.46■■□□□ 1.51
RIPPLY3-201ENST00000329553 CCDC158Q5M9N0 1113 aa24.45■■□□□ 1.5
RIPPLY3-201ENST00000329553 IL17RAQ96F46 866 aa24.45■■□□□ 1.5
RIPPLY3-201ENST00000329553 SNRKQ9NRH2 765 aa24.45■■□□□ 1.5
RIPPLY3-201ENST00000329553 LAMB2P55268 1798 aa24.45■■□□□ 1.5
RIPPLY3-201ENST00000329553 GOLIM4O00461 696 aa24.45■■□□□ 1.5
RIPPLY3-201ENST00000329553 MCM4P33991 863 aa24.45■■□□□ 1.5
RIPPLY3-201ENST00000329553 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.45■■□□□ 1.5
RIPPLY3-201ENST00000329553 PAG1Q9NWQ8 432 aa24.45■■□□□ 1.5
RIPPLY3-201ENST00000329553 RTL9Q8NET4 1388 aa24.44■■□□□ 1.5
RIPPLY3-201ENST00000329553 C3orf67Q6ZVT6 689 aa24.44■■□□□ 1.5
RIPPLY3-201ENST00000329553 KBTBD3Q8NAB2 608 aa24.44■■□□□ 1.5
RIPPLY3-201ENST00000329553 RTN4Q9NQC3 1192 aaKnown RBP24.44■■□□□ 1.5
RIPPLY3-201ENST00000329553 CHGBP05060 677 aa24.43■■□□□ 1.5
RIPPLY3-201ENST00000329553 RFC4P35249 363 aa24.43■■□□□ 1.5
RIPPLY3-201ENST00000329553 DDIT3P35638 169 aa24.43■■□□□ 1.5
RIPPLY3-201ENST00000329553 TTC39AQ5SRH9 613 aa24.43■■□□□ 1.5
RIPPLY3-201ENST00000329553 MPHOSPH8Q99549 860 aa24.43■■□□□ 1.5
RIPPLY3-201ENST00000329553 LRP5O75197 1615 aa24.43■■□□□ 1.5
RIPPLY3-201ENST00000329553 HELBQ8NG08 1087 aaPredicted RBP24.43■■□□□ 1.5
RIPPLY3-201ENST00000329553 MROH5Q6ZUA9 1318 aa24.43■■□□□ 1.5
RIPPLY3-201ENST00000329553 ST18O60284 1047 aa24.42■■□□□ 1.5
RIPPLY3-201ENST00000329553 GTF2E1P29083 439 aaPredicted RBP24.42■■□□□ 1.5
RIPPLY3-201ENST00000329553 SLC10A5Q5PT55 438 aa24.42■■□□□ 1.5
RIPPLY3-201ENST00000329553 NEK4P51957 841 aa24.42■■□□□ 1.5
RIPPLY3-201ENST00000329553 SF3B3Q15393 1217 aaKnown RBP24.42■■□□□ 1.5
RIPPLY3-201ENST00000329553 SLC27A3Q5K4L6 730 aa24.42■■□□□ 1.5
RIPPLY3-201ENST00000329553 RFX7Q2KHR2 1363 aa24.42■■□□□ 1.5
RIPPLY3-201ENST00000329553 NYXQ9GZU5 481 aa24.41■■□□□ 1.5
RIPPLY3-201ENST00000329553 CCDC171Q6TFL3 1326 aa24.41■■□□□ 1.5
RIPPLY3-201ENST00000329553 IGHMBP2P38935 993 aaKnown RBP24.41■■□□□ 1.5
RIPPLY3-201ENST00000329553 SNX14Q9Y5W7 946 aa24.41■■□□□ 1.5
RIPPLY3-201ENST00000329553 MED23Q9ULK4 1368 aa24.41■■□□□ 1.5
RIPPLY3-201ENST00000329553 ABCC12Q96J65 1359 aa24.4■■□□□ 1.5
RIPPLY3-201ENST00000329553 SCARF1Q14162 830 aa24.4■■□□□ 1.5
RIPPLY3-201ENST00000329553 ZNF589Q86UQ0 364 aaPredicted RBP24.4■■□□□ 1.5
RIPPLY3-201ENST00000329553 NBPF5PQ86XG9 351 aaPredicted RBP24.4■■□□□ 1.5
RIPPLY3-201ENST00000329553 RASEFQ8IZ41 740 aa24.4■■□□□ 1.5
RIPPLY3-201ENST00000329553 C4AP0C0L4 1744 aa24.4■■□□□ 1.5
RIPPLY3-201ENST00000329553 FGFR2P21802 821 aa24.39■■□□□ 1.5
RIPPLY3-201ENST00000329553 FKBP4Q02790 459 aaKnown RBP eCLIP24.39■■□□□ 1.5
RIPPLY3-201ENST00000329553 MAP4K1Q92918 833 aa24.39■■□□□ 1.5
RIPPLY3-201ENST00000329553 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.38■■□□□ 1.49
RIPPLY3-201ENST00000329553 TAF5LO75529 589 aa24.38■■□□□ 1.49
RIPPLY3-201ENST00000329553 PUM3Q15397 648 aaKnown RBP24.38■■□□□ 1.49
RIPPLY3-201ENST00000329553 TPTE2Q6XPS3 522 aa24.38■■□□□ 1.49
RIPPLY3-201ENST00000329553 PROM2Q8N271 834 aa24.38■■□□□ 1.49
RIPPLY3-201ENST00000329553 SEC62Q99442 399 aaKnown RBP24.38■■□□□ 1.49
RIPPLY3-201ENST00000329553 ADRA2BP18089 450 aa24.38■■□□□ 1.49
RIPPLY3-201ENST00000329553 NECTIN1Q15223 517 aa24.38■■□□□ 1.49
RIPPLY3-201ENST00000329553 LPIN2Q92539 896 aa24.38■■□□□ 1.49
RIPPLY3-201ENST00000329553 COL24A1Q17RW2 1714 aa24.38■■□□□ 1.49
RIPPLY3-201ENST00000329553 SNAP23O00161 211 aa24.37■■□□□ 1.49
RIPPLY3-201ENST00000329553 SLFNL1Q499Z3 407 aa24.37■■□□□ 1.49
RIPPLY3-201ENST00000329553 CCDC24Q8N4L8 307 aa24.37■■□□□ 1.49
RIPPLY3-201ENST00000329553 CDC5LQ99459 802 aaKnown RBP24.37■■□□□ 1.49
RIPPLY3-201ENST00000329553 COL4A1P02462 1669 aa24.37■■□□□ 1.49
RIPPLY3-201ENST00000329553 PRPF40BQ6NWY9 871 aaKnown RBP24.37■■□□□ 1.49
RIPPLY3-201ENST00000329553 UPF3BQ9BZI7 483 aaKnown RBP24.37■■□□□ 1.49
RIPPLY3-201ENST00000329553 RBM8AQ9Y5S9 174 aaKnown RBP24.37■■□□□ 1.49
RIPPLY3-201ENST00000329553 SPEF2Q9C093 1822 aa24.36■■□□□ 1.49
RIPPLY3-201ENST00000329553 ZAP70P43403 619 aa24.36■■□□□ 1.49
RIPPLY3-201ENST00000329553 TXNRD1Q16881 649 aa24.36■■□□□ 1.49
RIPPLY3-201ENST00000329553 MCMDC2Q4G0Z9 681 aa24.36■■□□□ 1.49
RIPPLY3-201ENST00000329553 TICAM2Q86XR7 235 aa24.36■■□□□ 1.49
RIPPLY3-201ENST00000329553 KCNB2Q92953 911 aa24.36■■□□□ 1.49
RIPPLY3-201ENST00000329553 FOXD4L1Q9NU39 408 aa24.36■■□□□ 1.49
RIPPLY3-201ENST00000329553 L1TD1Q5T7N2 865 aaKnown RBP24.35■■□□□ 1.49
RIPPLY3-201ENST00000329553 PI16Q6UXB8 463 aa24.35■■□□□ 1.49
RIPPLY3-201ENST00000329553 UBR3Q6ZT12 1888 aa24.35■■□□□ 1.49
RIPPLY3-201ENST00000329553 HSP90AA1P07900 732 aaKnown RBP24.35■■□□□ 1.49
RIPPLY3-201ENST00000329553 RXRBP28702 533 aa24.35■■□□□ 1.49
RIPPLY3-201ENST00000329553 MCAMP43121 646 aa24.35■■□□□ 1.49
RIPPLY3-201ENST00000329553 NFIXQ14938 502 aa24.35■■□□□ 1.49
RIPPLY3-201ENST00000329553 ZNF512BQ96KM6 892 aaPredicted RBP24.35■■□□□ 1.49
RIPPLY3-201ENST00000329553 NLRP3Q96P20 1036 aa24.35■■□□□ 1.49
RIPPLY3-201ENST00000329553 TAF1P21675 1872 aa24.35■■□□□ 1.49
RIPPLY3-201ENST00000329553 CASZ1Q86V15 1759 aa24.34■■□□□ 1.49
RIPPLY3-201ENST00000329553 CHRNDQ07001 517 aa24.34■■□□□ 1.49
RIPPLY3-201ENST00000329553 CCDC102BQ68D86 513 aa24.34■■□□□ 1.49
RIPPLY3-201ENST00000329553 CCDC129Q6ZRS4 1044 aa24.34■■□□□ 1.49
RIPPLY3-201ENST00000329553 ANKRD18AQ8IVF6 992 aa24.34■■□□□ 1.49
RIPPLY3-201ENST00000329553 PHKA1P46020 1223 aa24.34■■□□□ 1.49
RIPPLY3-201ENST00000329553 KCNJ4P48050 445 aa24.34■■□□□ 1.49
RIPPLY3-201ENST00000329553 CIZ1Q9ULV3 898 aaPredicted RBP24.34■■□□□ 1.49
RIPPLY3-201ENST00000329553 SLC5A1P13866 664 aa24.33■■□□□ 1.49
RIPPLY3-201ENST00000329553 AKAP11Q9UKA4 1901 aa24.33■■□□□ 1.49
RIPPLY3-201ENST00000329553 RNF113AO15541 343 aaKnown RBP24.33■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms