RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CTNNA2P26232 953 aa19.79■□□□□ 0.76
SYNPO-201ENST00000307662 GTF3C6Q969F1 213 aa19.79■□□□□ 0.76
SYNPO-201ENST00000307662 AK2P54819 239 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 HDXQ7Z353 690 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 DRC1Q96MC2 740 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 SELENOOQ9BVL4 669 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 LRRC2Q9BYS8 371 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 IFNKQ9P0W0 207 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 PRAG1Q86YV5 1406 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 PI4KAP2A4QPH2 592 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 KRT86O43790 486 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.78■□□□□ 0.76
SYNPO-201ENST00000307662 PI4KAP1Q8N8J0 262 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 SPTLC2O15270 562 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 MPRIPQ6WCQ1 1025 aa19.78■□□□□ 0.76
SYNPO-201ENST00000307662 ANKRD18BA2A2Z9 1011 aa19.77■□□□□ 0.76
SYNPO-201ENST00000307662 MYRIPQ8NFW9 859 aa19.77■□□□□ 0.76
SYNPO-201ENST00000307662 ANKRD24Q8TF21 1146 aa19.77■□□□□ 0.76
SYNPO-201ENST00000307662 PUF60Q9UHX1 559 aaKnown RBP19.77■□□□□ 0.76
SYNPO-201ENST00000307662 DDX12PQ92771 950 aa19.77■□□□□ 0.76
SYNPO-201ENST00000307662 CCDC129Q6ZRS4 1044 aa19.77■□□□□ 0.76
SYNPO-201ENST00000307662 CEP57Q86XR8 500 aa19.77■□□□□ 0.76
SYNPO-201ENST00000307662 DUOX2Q9NRD8 1548 aa19.77■□□□□ 0.76
SYNPO-201ENST00000307662 ATP10BO94823 1461 aa19.77■□□□□ 0.76
SYNPO-201ENST00000307662 MARCKSP29966 332 aaPredicted RBP19.77■□□□□ 0.75
SYNPO-201ENST00000307662 ATP8B2P98198 1209 aa19.77■□□□□ 0.75
SYNPO-201ENST00000307662 KARSQ15046 597 aaKnown RBP19.77■□□□□ 0.75
SYNPO-201ENST00000307662 CCDC6Q16204 474 aa19.77■□□□□ 0.75
SYNPO-201ENST00000307662 SPTY2D1Q68D10 685 aaPredicted RBP19.77■□□□□ 0.75
SYNPO-201ENST00000307662 PHACTR2O75167 634 aa19.76■□□□□ 0.75
SYNPO-201ENST00000307662 KIF4AO95239 1232 aa19.76■□□□□ 0.75
SYNPO-201ENST00000307662 DZIP1Q86YF9 867 aaKnown RBP19.76■□□□□ 0.75
SYNPO-201ENST00000307662 PLCH2O75038 1416 aa19.76■□□□□ 0.75
SYNPO-201ENST00000307662 SPATA24Q86W54 205 aa19.76■□□□□ 0.75
SYNPO-201ENST00000307662 SNRKQ9NRH2 765 aa19.76■□□□□ 0.75
SYNPO-201ENST00000307662 ZBTB43O43298 467 aa19.76■□□□□ 0.75
SYNPO-201ENST00000307662 ZNF569Q5MCW4 686 aa19.76■□□□□ 0.75
SYNPO-201ENST00000307662 KRBA2Q6ZNG9 492 aa19.76■□□□□ 0.75
SYNPO-201ENST00000307662 USP26Q9BXU7 913 aa19.76■□□□□ 0.75
SYNPO-201ENST00000307662 DCTPP1Q9H773 170 aa19.76■□□□□ 0.75
SYNPO-201ENST00000307662 U2AF2P26368 475 aaKnown RBP eCLIP19.75■□□□□ 0.75
SYNPO-201ENST00000307662 GABPB1Q06547 395 aaPredicted RBP19.75■□□□□ 0.75
SYNPO-201ENST00000307662 STMN4Q9H169 189 aaPredicted RBP19.75■□□□□ 0.75
SYNPO-201ENST00000307662 A0A1B0GUL7 405 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 A0A1W2PRG0 241 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 RHOXF2BP0C7M4 288 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 KIF5AQ12840 1032 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 RHOXF2Q9BQY4 288 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 LZTFL1Q9NQ48 299 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 RIOK3O14730 519 aaKnown RBP19.75■□□□□ 0.75
SYNPO-201ENST00000307662 PTCD1O75127 700 aaKnown RBP19.75■□□□□ 0.75
SYNPO-201ENST00000307662 RLBP1P12271 317 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 RASAL2Q9UJF2 1139 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 NUP153P49790 1475 aaKnown RBP19.75■□□□□ 0.75
SYNPO-201ENST00000307662 TCOF1Q13428 1488 aaKnown RBP19.75■□□□□ 0.75
SYNPO-201ENST00000307662 PRC1O43663 620 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 CCDC172P0C7W6 258 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 STAT6P42226 847 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 DDX46Q7L014 1031 aaKnown RBP19.75■□□□□ 0.75
SYNPO-201ENST00000307662 FAM76AQ8TAV0 307 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 HOMER2Q9NSB8 354 aa19.75■□□□□ 0.75
SYNPO-201ENST00000307662 EVCP57679 992 aa19.74■□□□□ 0.75
SYNPO-201ENST00000307662 TNNQ9UQP3 1299 aa19.74■□□□□ 0.75
SYNPO-201ENST00000307662 MCMDC2Q4G0Z9 681 aa19.74■□□□□ 0.75
SYNPO-201ENST00000307662 ARFGAP2Q8N6H7 521 aa19.74■□□□□ 0.75
SYNPO-201ENST00000307662 PPM1EQ8WY54 764 aa19.74■□□□□ 0.75
SYNPO-201ENST00000307662 ITSN2Q9NZM3 1697 aa19.74■□□□□ 0.75
SYNPO-201ENST00000307662 PSMA7O14818 248 aa19.74■□□□□ 0.75
SYNPO-201ENST00000307662 ZNF445P59923 1031 aa19.74■□□□□ 0.75
SYNPO-201ENST00000307662 SPAG5Q96R06 1193 aa19.74■□□□□ 0.75
SYNPO-201ENST00000307662 NBPF7P0C2Y1 421 aaPredicted RBP19.73■□□□□ 0.75
SYNPO-201ENST00000307662 STXBP4Q6ZWJ1 553 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 CUL5Q93034 780 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 CAPZA3Q96KX2 299 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 PLEKHM2Q8IWE5 1019 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 WTAPQ15007 396 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 PLVAPQ9BX97 442 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 BICDL1Q6ZP65 573 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 CCDC114Q96M63 670 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 UTP14AQ9BVJ6 771 aaKnown RBP19.73■□□□□ 0.75
SYNPO-201ENST00000307662 ZBTB40Q9NUA8 1239 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 TMOD3Q9NYL9 352 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 GUCA1BQ9UMX6 200 aa19.73■□□□□ 0.75
SYNPO-201ENST00000307662 ZFYP08048 801 aaPredicted RBP19.72■□□□□ 0.75
SYNPO-201ENST00000307662 PPP2R3AQ06190 1150 aa19.72■□□□□ 0.75
SYNPO-201ENST00000307662 KRI1Q8N9T8 703 aaKnown RBP19.72■□□□□ 0.75
SYNPO-201ENST00000307662 ZEB2O60315 1214 aa19.72■□□□□ 0.75
SYNPO-201ENST00000307662 KAT14Q9H8E8 782 aa19.72■□□□□ 0.75
SYNPO-201ENST00000307662 TRMT112Q9UI30 125 aaKnown RBP19.72■□□□□ 0.75
SYNPO-201ENST00000307662 ACEP12821 1306 aa19.72■□□□□ 0.75
SYNPO-201ENST00000307662 GBP6Q6ZN66 633 aa19.72■□□□□ 0.75
SYNPO-201ENST00000307662 KRT23Q9C075 422 aa19.72■□□□□ 0.75
SYNPO-201ENST00000307662 NMIQ13287 307 aaPredicted RBP19.71■□□□□ 0.75
SYNPO-201ENST00000307662 ZNF652Q9Y2D9 606 aa19.71■□□□□ 0.75
SYNPO-201ENST00000307662 IKBKGQ9Y6K9 419 aa19.71■□□□□ 0.75
SYNPO-201ENST00000307662 POLR3AO14802 1390 aaPredicted RBP19.71■□□□□ 0.75
SYNPO-201ENST00000307662 FOXO3O43524 673 aa19.71■□□□□ 0.75
SYNPO-201ENST00000307662 UBE3BQ7Z3V4 1068 aa19.71■□□□□ 0.75
SYNPO-201ENST00000307662 CRACR2BQ8N4Y2 399 aaPredicted RBP19.71■□□□□ 0.75
SYNPO-201ENST00000307662 TTC14Q96N46 770 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms