RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 C4BP0C0L5 1744 aa17.23■□□□□ 0.35
C9orf3-202ENST00000297979 NMIQ13287 307 aaPredicted RBP17.23■□□□□ 0.35
C9orf3-202ENST00000297979 EDC3Q96F86 508 aaKnown RBP17.23■□□□□ 0.35
C9orf3-202ENST00000297979 NARFQ9UHQ1 456 aa17.23■□□□□ 0.35
C9orf3-202ENST00000297979 PALD1Q9ULE6 856 aa17.23■□□□□ 0.35
C9orf3-202ENST00000297979 RTCBQ9Y3I0 505 aaKnown RBP17.22■□□□□ 0.35
C9orf3-202ENST00000297979 FAM227BQ96M60 508 aa17.22■□□□□ 0.35
C9orf3-202ENST00000297979 FAM196AQ6ZSG2 479 aa17.21■□□□□ 0.35
C9orf3-202ENST00000297979 KRT27Q7Z3Y8 459 aa17.21■□□□□ 0.35
C9orf3-202ENST00000297979 NDUFB9Q9Y6M9 179 aa17.21■□□□□ 0.35
C9orf3-202ENST00000297979 SPEF2Q9C093 1822 aa17.21■□□□□ 0.35
C9orf3-202ENST00000297979 CCDC152Q4G0S7 254 aa17.21■□□□□ 0.35
C9orf3-202ENST00000297979 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.21■□□□□ 0.35
C9orf3-202ENST00000297979 SNRKQ9NRH2 765 aa17.21■□□□□ 0.35
C9orf3-202ENST00000297979 RTL9Q8NET4 1388 aa17.21■□□□□ 0.35
C9orf3-202ENST00000297979 USPL1Q5W0Q7 1092 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 SMIM5Q71RC9 77 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 XAGE2Q96GT9 111 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 BCL2L12Q9HB09 334 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 A0A0D9SFI3 127 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 ATP2B3Q16720 1220 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 CCDC158Q5M9N0 1113 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 ZPR1O75312 459 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 IFIT1P09914 478 aaKnown RBP17.2■□□□□ 0.34
C9orf3-202ENST00000297979 ADORA1P30542 326 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 GORABQ5T7V8 394 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 VGLL2Q8N8G2 317 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 PAG1Q9NWQ8 432 aa17.2■□□□□ 0.34
C9orf3-202ENST00000297979 COL24A1Q17RW2 1714 aa17.19■□□□□ 0.34
C9orf3-202ENST00000297979 ABCC12Q96J65 1359 aa17.19■□□□□ 0.34
C9orf3-202ENST00000297979 MED23Q9ULK4 1368 aa17.19■□□□□ 0.34
C9orf3-202ENST00000297979 TMEM132AQ24JP5 1023 aa17.19■□□□□ 0.34
C9orf3-202ENST00000297979 TBC1D9BQ66K14 1250 aa17.19■□□□□ 0.34
C9orf3-202ENST00000297979 DDX46Q7L014 1031 aaKnown RBP17.19■□□□□ 0.34
C9orf3-202ENST00000297979 KBTBD3Q8NAB2 608 aa17.19■□□□□ 0.34
C9orf3-202ENST00000297979 SRP68Q9UHB9 627 aaKnown RBP17.19■□□□□ 0.34
C9orf3-202ENST00000297979 C4AP0C0L4 1744 aa17.19■□□□□ 0.34
C9orf3-202ENST00000297979 CCDC171Q6TFL3 1326 aa17.19■□□□□ 0.34
C9orf3-202ENST00000297979 TTC39AQ5SRH9 613 aa17.19■□□□□ 0.34
C9orf3-202ENST00000297979 MROH5Q6ZUA9 1318 aa17.19■□□□□ 0.34
C9orf3-202ENST00000297979 HSP90AA1P07900 732 aaKnown RBP17.18■□□□□ 0.34
C9orf3-202ENST00000297979 PTH1RQ03431 593 aa17.18■□□□□ 0.34
C9orf3-202ENST00000297979 GOLIM4O00461 696 aa17.18■□□□□ 0.34
C9orf3-202ENST00000297979 PDE8BO95263 885 aa17.18■□□□□ 0.34
C9orf3-202ENST00000297979 NEK4P51957 841 aa17.18■□□□□ 0.34
C9orf3-202ENST00000297979 BICDL1Q6ZP65 573 aa17.18■□□□□ 0.34
C9orf3-202ENST00000297979 TICAM2Q86XR7 235 aa17.18■□□□□ 0.34
C9orf3-202ENST00000297979 ERFEQ4G0M1 354 aa17.17■□□□□ 0.34
C9orf3-202ENST00000297979 ZNF772Q68DY9 489 aaPredicted RBP17.17■□□□□ 0.34
C9orf3-202ENST00000297979 AMIGO3Q86WK7 504 aa17.17■□□□□ 0.34
C9orf3-202ENST00000297979 ARHGEF1Q92888 912 aaKnown RBP17.17■□□□□ 0.34
C9orf3-202ENST00000297979 MPHOSPH8Q99549 860 aa17.17■□□□□ 0.34
C9orf3-202ENST00000297979 SEC31BQ9NQW1 1179 aa17.17■□□□□ 0.34
C9orf3-202ENST00000297979 IL27Q8NEV9 243 aa17.17■□□□□ 0.34
C9orf3-202ENST00000297979 CHMP5Q9NZZ3 219 aa17.17■□□□□ 0.34
C9orf3-202ENST00000297979 SETDB2Q96T68 719 aa17.16■□□□□ 0.34
C9orf3-202ENST00000297979 NYXQ9GZU5 481 aa17.16■□□□□ 0.34
C9orf3-202ENST00000297979 LRRC4BQ9NT99 713 aa17.16■□□□□ 0.34
C9orf3-202ENST00000297979 SNX14Q9Y5W7 946 aa17.16■□□□□ 0.34
C9orf3-202ENST00000297979 ARAP2Q8WZ64 1704 aa17.16■□□□□ 0.34
C9orf3-202ENST00000297979 CASZ1Q86V15 1759 aa17.16■□□□□ 0.34
C9orf3-202ENST00000297979 IGHMBP2P38935 993 aaKnown RBP17.16■□□□□ 0.34
C9orf3-202ENST00000297979 NFKBIBQ15653 356 aa17.16■□□□□ 0.34
C9orf3-202ENST00000297979 DDIT3P35638 169 aa17.16■□□□□ 0.34
C9orf3-202ENST00000297979 RBM6P78332 1123 aaKnown RBP17.16■□□□□ 0.34
C9orf3-202ENST00000297979 PUM3Q15397 648 aaKnown RBP17.16■□□□□ 0.34
C9orf3-202ENST00000297979 MCM2P49736 904 aa17.15■□□□□ 0.34
C9orf3-202ENST00000297979 TRAPPC3LQ5T215 181 aa17.15■□□□□ 0.34
C9orf3-202ENST00000297979 MAP4K1Q92918 833 aa17.15■□□□□ 0.34
C9orf3-202ENST00000297979 GTF2E1P29083 439 aaPredicted RBP17.15■□□□□ 0.34
C9orf3-202ENST00000297979 RFC4P35249 363 aa17.15■□□□□ 0.34
C9orf3-202ENST00000297979 ZNF589Q86UQ0 364 aaPredicted RBP17.15■□□□□ 0.34
C9orf3-202ENST00000297979 PHF14O94880 888 aa17.14■□□□□ 0.33
C9orf3-202ENST00000297979 TRIM37O94972 964 aa17.14■□□□□ 0.33
C9orf3-202ENST00000297979 SF3B3Q15393 1217 aaKnown RBP17.14■□□□□ 0.33
C9orf3-202ENST00000297979 SLC27A3Q5K4L6 730 aa17.14■□□□□ 0.33
C9orf3-202ENST00000297979 RASEFQ8IZ41 740 aa17.14■□□□□ 0.33
C9orf3-202ENST00000297979 CDC5LQ99459 802 aaKnown RBP17.14■□□□□ 0.33
C9orf3-202ENST00000297979 RBM8AQ9Y5S9 174 aaKnown RBP17.14■□□□□ 0.33
C9orf3-202ENST00000297979 SLC10A5Q5PT55 438 aa17.14■□□□□ 0.33
C9orf3-202ENST00000297979 PRPF40BQ6NWY9 871 aaKnown RBP17.14■□□□□ 0.33
C9orf3-202ENST00000297979 KCNB2Q92953 911 aa17.14■□□□□ 0.33
C9orf3-202ENST00000297979 ADRA2BP18089 450 aa17.13■□□□□ 0.33
C9orf3-202ENST00000297979 KCNJ4P48050 445 aa17.13■□□□□ 0.33
C9orf3-202ENST00000297979 FKBP4Q02790 459 aaKnown RBP eCLIP17.13■□□□□ 0.333e-6■■□□□ 13.3
C9orf3-202ENST00000297979 NECTIN1Q15223 517 aa17.13■□□□□ 0.33
C9orf3-202ENST00000297979 MCMDC2Q4G0Z9 681 aa17.13■□□□□ 0.33
C9orf3-202ENST00000297979 NBPF5PQ86XG9 351 aaPredicted RBP17.13■□□□□ 0.33
C9orf3-202ENST00000297979 LPIN2Q92539 896 aa17.13■□□□□ 0.33
C9orf3-202ENST00000297979 UPF3BQ9BZI7 483 aaKnown RBP17.13■□□□□ 0.33
C9orf3-202ENST00000297979 CIZ1Q9ULV3 898 aaPredicted RBP17.13■□□□□ 0.33
C9orf3-202ENST00000297979 UBR3Q6ZT12 1888 aa17.13■□□□□ 0.33
C9orf3-202ENST00000297979 FGFR2P21802 821 aa17.13■□□□□ 0.33
C9orf3-202ENST00000297979 ZNF512BQ96KM6 892 aaPredicted RBP17.13■□□□□ 0.33
C9orf3-202ENST00000297979 FOXD4L1Q9NU39 408 aa17.13■□□□□ 0.33
C9orf3-202ENST00000297979 SCARF1Q14162 830 aa17.12■□□□□ 0.33
C9orf3-202ENST00000297979 C3orf67Q6ZVT6 689 aa17.12■□□□□ 0.33
C9orf3-202ENST00000297979 HELBQ8NG08 1087 aaPredicted RBP17.12■□□□□ 0.33
C9orf3-202ENST00000297979 TAF5LO75529 589 aa17.12■□□□□ 0.33
C9orf3-202ENST00000297979 CHGBP05060 677 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms