RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TCHHQ07283 1943 aa28.57■■■□□ 2.16
TRIM54-201ENST00000296098 TOB2Q14106 344 aaPredicted RBP28.57■■■□□ 2.16
TRIM54-201ENST00000296098 CSF1RP07333 972 aa28.56■■■□□ 2.16
TRIM54-201ENST00000296098 TAF7LQ5H9L4 462 aa28.56■■■□□ 2.16
TRIM54-201ENST00000296098 AKAP2Q9Y2D5 859 aa28.56■■■□□ 2.16
TRIM54-201ENST00000296098 SYAP1Q96A49 352 aaPredicted RBP28.55■■■□□ 2.16
TRIM54-201ENST00000296098 IFIT5Q13325 482 aaKnown RBP28.55■■■□□ 2.16
TRIM54-201ENST00000296098 HLFQ16534 295 aa28.55■■■□□ 2.16
TRIM54-201ENST00000296098 SYTL4Q96C24 671 aaPredicted RBP28.55■■■□□ 2.16
TRIM54-201ENST00000296098 NEK1Q96PY6 1258 aa28.55■■■□□ 2.16
TRIM54-201ENST00000296098 MTMR6Q9Y217 621 aa28.55■■■□□ 2.16
TRIM54-201ENST00000296098 MYH3P11055 1940 aa28.54■■■□□ 2.16
TRIM54-201ENST00000296098 ZMYM1Q5SVZ6 1142 aa28.54■■■□□ 2.16
TRIM54-201ENST00000296098 LRSAM1Q6UWE0 723 aa28.54■■■□□ 2.16
TRIM54-201ENST00000296098 NLRP10Q86W26 655 aa28.54■■■□□ 2.16
TRIM54-201ENST00000296098 CNPY2Q9Y2B0 182 aa28.54■■■□□ 2.16
TRIM54-201ENST00000296098 GPTP24298 496 aa28.53■■■□□ 2.16
TRIM54-201ENST00000296098 PRIM1P49642 420 aaKnown RBP28.53■■■□□ 2.16
TRIM54-201ENST00000296098 CCDC85AQ96PX6 553 aaPredicted RBP28.53■■■□□ 2.16
TRIM54-201ENST00000296098 ZBTB1Q9Y2K1 713 aa28.53■■■□□ 2.16
TRIM54-201ENST00000296098 SYCE3A1L190 88 aa28.53■■■□□ 2.16
TRIM54-201ENST00000296098 GADD45BO75293 160 aaPredicted RBP28.53■■■□□ 2.16
TRIM54-201ENST00000296098 CYP21A2P08686 494 aa28.53■■■□□ 2.16
TRIM54-201ENST00000296098 NRAPQ86VF7 1730 aa28.53■■■□□ 2.16
TRIM54-201ENST00000296098 NUP98P52948 1817 aa28.53■■■□□ 2.16
TRIM54-201ENST00000296098 RIC1Q4ADV7 1423 aa28.52■■■□□ 2.16
TRIM54-201ENST00000296098 CCDC158Q5M9N0 1113 aa28.52■■■□□ 2.16
TRIM54-201ENST00000296098 ANP32BQ92688 251 aaKnown RBP28.52■■■□□ 2.16
TRIM54-201ENST00000296098 DSCC1Q9BVC3 393 aa28.52■■■□□ 2.16
TRIM54-201ENST00000296098 PDIA4P13667 645 aaKnown RBP28.52■■■□□ 2.16
TRIM54-201ENST00000296098 CCDC173Q0VFZ6 552 aa28.52■■■□□ 2.16
TRIM54-201ENST00000296098 TTC39AQ5SRH9 613 aa28.52■■■□□ 2.16
TRIM54-201ENST00000296098 KAT6BQ8WYB5 2073 aa28.51■■■□□ 2.16
TRIM54-201ENST00000296098 GORABQ5T7V8 394 aa28.51■■■□□ 2.15
TRIM54-201ENST00000296098 LAMA4Q16363 1823 aa28.5■■■□□ 2.15
TRIM54-201ENST00000296098 VPS37CA5D8V6 355 aaPredicted RBP28.5■■■□□ 2.15
TRIM54-201ENST00000296098 RNF113AO15541 343 aaKnown RBP28.5■■■□□ 2.15
TRIM54-201ENST00000296098 XAGE2Q96GT9 111 aa28.5■■■□□ 2.15
TRIM54-201ENST00000296098 RBSNQ9H1K0 784 aa28.5■■■□□ 2.15
TRIM54-201ENST00000296098 DTNBO60941 627 aa28.5■■■□□ 2.15
TRIM54-201ENST00000296098 ADORA1P30542 326 aa28.5■■■□□ 2.15
TRIM54-201ENST00000296098 MAST3O60307 1309 aa28.49■■■□□ 2.15
TRIM54-201ENST00000296098 SLFNL1Q499Z3 407 aa28.49■■■□□ 2.15
TRIM54-201ENST00000296098 SYNE4Q8N205 404 aa28.49■■■□□ 2.15
TRIM54-201ENST00000296098 CDCA7Q9BWT1 371 aaPredicted RBP28.49■■■□□ 2.15
TRIM54-201ENST00000296098 RRAGDQ9NQL2 400 aaPredicted RBP28.49■■■□□ 2.15
TRIM54-201ENST00000296098 PDCP20941 246 aa28.48■■■□□ 2.15
TRIM54-201ENST00000296098 CTSWP56202 376 aa28.48■■■□□ 2.15
TRIM54-201ENST00000296098 ABCC12Q96J65 1359 aa28.48■■■□□ 2.15
TRIM54-201ENST00000296098 IL6STP40189 918 aaPredicted RBP28.48■■■□□ 2.15
TRIM54-201ENST00000296098 LRRFIP1Q32MZ4 808 aaKnown RBP28.48■■■□□ 2.15
TRIM54-201ENST00000296098 LARP1BQ659C4 914 aaKnown RBP28.48■■■□□ 2.15
TRIM54-201ENST00000296098 PHF14O94880 888 aa28.47■■■□□ 2.15
TRIM54-201ENST00000296098 CSPP1Q1MSJ5 1256 aa28.47■■■□□ 2.15
TRIM54-201ENST00000296098 TTLL11Q8NHH1 800 aa28.47■■■□□ 2.15
TRIM54-201ENST00000296098 TRIM44Q96DX7 344 aaPredicted RBP28.47■■■□□ 2.15
TRIM54-201ENST00000296098 PPP1R9BQ96SB3 815 aa28.47■■■□□ 2.15
TRIM54-201ENST00000296098 PHLPP1O60346 1717 aa28.47■■■□□ 2.15
TRIM54-201ENST00000296098 ERVV-1B6SEH8 477 aa28.47■■■□□ 2.15
TRIM54-201ENST00000296098 HMGB1P09429 215 aaKnown RBP28.47■■■□□ 2.15
TRIM54-201ENST00000296098 ITGA6P23229 1130 aa28.47■■■□□ 2.15
TRIM54-201ENST00000296098 FKBP4Q02790 459 aaKnown RBP eCLIP28.47■■■□□ 2.15
TRIM54-201ENST00000296098 GREM2Q9H772 168 aa28.47■■■□□ 2.15
TRIM54-201ENST00000296098 FIBPO43427 364 aa28.46■■■□□ 2.15
TRIM54-201ENST00000296098 UBE2HP62256 183 aa28.46■■■□□ 2.15
TRIM54-201ENST00000296098 Q6ZUG5 572 aa28.46■■■□□ 2.15
TRIM54-201ENST00000296098 DZIP3Q86Y13 1208 aaKnown RBP28.46■■■□□ 2.15
TRIM54-201ENST00000296098 IRS4O14654 1257 aaPredicted RBP28.45■■■□□ 2.15
TRIM54-201ENST00000296098 STK3Q13188 491 aa28.45■■■□□ 2.15
TRIM54-201ENST00000296098 STOX1Q6ZVD7 989 aa28.45■■■□□ 2.15
TRIM54-201ENST00000296098 TRMT112Q9UI30 125 aaKnown RBP28.45■■■□□ 2.15
TRIM54-201ENST00000296098 ANKRD18BA2A2Z9 1011 aa28.45■■■□□ 2.14
TRIM54-201ENST00000296098 HSPD1P10809 573 aaKnown RBP28.45■■■□□ 2.14
TRIM54-201ENST00000296098 METTL24Q5JXM2 366 aa28.45■■■□□ 2.14
TRIM54-201ENST00000296098 GTF3C6Q969F1 213 aa28.45■■■□□ 2.14
TRIM54-201ENST00000296098 SPATA31A1Q5TZJ5 1347 aa28.45■■■□□ 2.14
TRIM54-201ENST00000296098 ATP2B3Q16720 1220 aa28.44■■■□□ 2.14
TRIM54-201ENST00000296098 RIPOR2Q9Y4F9 1068 aa28.44■■■□□ 2.14
TRIM54-201ENST00000296098 M0R2C6 588 aa28.43■■■□□ 2.14
TRIM54-201ENST00000296098 HSP90B1P14625 803 aaKnown RBP28.43■■■□□ 2.14
TRIM54-201ENST00000296098 DNM1Q05193 864 aaKnown RBP28.43■■■□□ 2.14
TRIM54-201ENST00000296098 LDHAL6AQ6ZMR3 332 aa28.43■■■□□ 2.14
TRIM54-201ENST00000296098 THRAP3Q9Y2W1 955 aaKnown RBP28.43■■■□□ 2.14
TRIM54-201ENST00000296098 LRP5O75197 1615 aa28.43■■■□□ 2.14
TRIM54-201ENST00000296098 MYH7P12883 1935 aa28.43■■■□□ 2.14
TRIM54-201ENST00000296098 ZFYP08048 801 aaPredicted RBP28.43■■■□□ 2.14
TRIM54-201ENST00000296098 ADAMTS2O95450 1211 aa28.42■■■□□ 2.14
TRIM54-201ENST00000296098 DDB1Q16531 1140 aa28.42■■■□□ 2.14
TRIM54-201ENST00000296098 CDC37L1Q7L3B6 337 aa28.42■■■□□ 2.14
TRIM54-201ENST00000296098 TBC1D2BQ9UPU7 963 aa28.42■■■□□ 2.14
TRIM54-201ENST00000296098 UBN2Q6ZU65 1347 aa28.42■■■□□ 2.14
TRIM54-201ENST00000296098 CNNM1Q9NRU3 951 aa28.42■■■□□ 2.14
TRIM54-201ENST00000296098 LTBP4Q8N2S1 1624 aa28.41■■■□□ 2.14
TRIM54-201ENST00000296098 PDE8AO60658 829 aa28.41■■■□□ 2.14
TRIM54-201ENST00000296098 SCARF1Q14162 830 aa28.41■■■□□ 2.14
TRIM54-201ENST00000296098 DHX32Q7L7V1 743 aaKnown RBP28.41■■■□□ 2.14
TRIM54-201ENST00000296098 OSBP2Q969R2 916 aa28.41■■■□□ 2.14
TRIM54-201ENST00000296098 TSPY26PQ9H489 355 aa28.41■■■□□ 2.14
TRIM54-201ENST00000296098 FGD1P98174 961 aa28.4■■■□□ 2.14
TRIM54-201ENST00000296098 CCDC183Q5T5S1 534 aa28.4■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms