RNA–Protein interactions for RNA: ENST00000294489.10

PDPN-201, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 3,104 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-201ENST00000294489 CEP126Q9P2H0 1117 aa11.05□□□□□ -0.64
PDPN-201ENST00000294489 TNRC6CQ9HCJ0 1690 aaKnown RBP11.05□□□□□ -0.64
PDPN-201ENST00000294489 SF3B3Q15393 1217 aaKnown RBP11.04□□□□□ -0.64
PDPN-201ENST00000294489 KCNB2Q92953 911 aa11.04□□□□□ -0.64
PDPN-201ENST00000294489 RTCBQ9Y3I0 505 aaKnown RBP11.04□□□□□ -0.64
PDPN-201ENST00000294489 MED23Q9ULK4 1368 aa11.04□□□□□ -0.64
PDPN-201ENST00000294489 A0A1B0GUL7 405 aa11.04□□□□□ -0.64
PDPN-201ENST00000294489 GNPATO15228 680 aa11.04□□□□□ -0.64
PDPN-201ENST00000294489 HSPA4P34932 840 aa11.04□□□□□ -0.64
PDPN-201ENST00000294489 TBC1D9BQ66K14 1250 aa11.04□□□□□ -0.64
PDPN-201ENST00000294489 ARHGEF1Q92888 912 aaKnown RBP11.04□□□□□ -0.64
PDPN-201ENST00000294489 BOLA2Q9H3K6 86 aa11.04□□□□□ -0.64
PDPN-201ENST00000294489 NRXN2Q9P2S2 1712 aa11.04□□□□□ -0.64
PDPN-201ENST00000294489 HMGB2P26583 209 aaKnown RBP11.04□□□□□ -0.64
PDPN-201ENST00000294489 MROH5Q6ZUA9 1318 aa11.04□□□□□ -0.64
PDPN-201ENST00000294489 FGFR2P21802 821 aa11.03□□□□□ -0.64
PDPN-201ENST00000294489 MCM4P33991 863 aa11.03□□□□□ -0.64
PDPN-201ENST00000294489 GSE1Q14687 1217 aa11.03□□□□□ -0.64
PDPN-201ENST00000294489 PALD1Q9ULE6 856 aa11.03□□□□□ -0.64
PDPN-201ENST00000294489 QSER1Q2KHR3 1735 aa11.03□□□□□ -0.64
PDPN-201ENST00000294489 HCLS1P14317 486 aaPredicted RBP11.03□□□□□ -0.64
PDPN-201ENST00000294489 TIMM10P62072 90 aa11.03□□□□□ -0.64
PDPN-201ENST00000294489 CCDC152Q4G0S7 254 aa11.03□□□□□ -0.64
PDPN-201ENST00000294489 USPL1Q5W0Q7 1092 aa11.03□□□□□ -0.64
PDPN-201ENST00000294489 CWC22Q9HCG8 908 aaKnown RBP11.03□□□□□ -0.64
PDPN-201ENST00000294489 TAF1P21675 1872 aa11.03□□□□□ -0.64
PDPN-201ENST00000294489 RAB3GAP1Q15042 981 aa11.02□□□□□ -0.64
PDPN-201ENST00000294489 LDHAL6AQ6ZMR3 332 aa11.02□□□□□ -0.64
PDPN-201ENST00000294489 FSD1Q9BTV5 496 aa11.02□□□□□ -0.64
PDPN-201ENST00000294489 NYXQ9GZU5 481 aa11.02□□□□□ -0.64
PDPN-201ENST00000294489 GBP4Q96PP9 640 aa11.02□□□□□ -0.65
PDPN-201ENST00000294489 SRP68Q9UHB9 627 aaKnown RBP11.02□□□□□ -0.65
PDPN-201ENST00000294489 DDX11L8A8MPP1 907 aa11.02□□□□□ -0.65
PDPN-201ENST00000294489 PLSCR1O15162 318 aa11.02□□□□□ -0.65
PDPN-201ENST00000294489 PDE8BO95263 885 aa11.02□□□□□ -0.65
PDPN-201ENST00000294489 ERFEQ4G0M1 354 aa11.02□□□□□ -0.65
PDPN-201ENST00000294489 XAGE2Q96GT9 111 aa11.02□□□□□ -0.65
PDPN-201ENST00000294489 TAF7LQ5H9L4 462 aa11.01□□□□□ -0.65
PDPN-201ENST00000294489 PROM2Q8N271 834 aa11.01□□□□□ -0.65
PDPN-201ENST00000294489 KBTBD3Q8NAB2 608 aa11.01□□□□□ -0.65
PDPN-201ENST00000294489 ZPR1O75312 459 aa11.01□□□□□ -0.65
PDPN-201ENST00000294489 SSFA2P28290 1259 aa11.01□□□□□ -0.65
PDPN-201ENST00000294489 NUCB2P80303 420 aa11.01□□□□□ -0.65
PDPN-201ENST00000294489 NMIQ13287 307 aaPredicted RBP11.01□□□□□ -0.65
PDPN-201ENST00000294489 TRAPPC3LQ5T215 181 aa11.01□□□□□ -0.65
PDPN-201ENST00000294489 TNPO1Q92973 898 aaKnown RBP11.01□□□□□ -0.65
PDPN-201ENST00000294489 CCDC85AQ96PX6 553 aaPredicted RBP11.01□□□□□ -0.65
PDPN-201ENST00000294489 ADORA1P30542 326 aa11□□□□□ -0.65
PDPN-201ENST00000294489 SMIM5Q71RC9 77 aa11□□□□□ -0.65
PDPN-201ENST00000294489 MYO5AQ9Y4I1 1855 aaKnown RBP11□□□□□ -0.65
PDPN-201ENST00000294489 ZBTB22O15209 634 aa11□□□□□ -0.65
PDPN-201ENST00000294489 TRIM37O94972 964 aa11□□□□□ -0.65
PDPN-201ENST00000294489 ATP2B3Q16720 1220 aa11□□□□□ -0.65
PDPN-201ENST00000294489 METTL24Q5JXM2 366 aa11□□□□□ -0.65
PDPN-201ENST00000294489 C3orf67Q6ZVT6 689 aa11□□□□□ -0.65
PDPN-201ENST00000294489 NEUROD6Q96NK8 337 aa11□□□□□ -0.65
PDPN-201ENST00000294489 PAG1Q9NWQ8 432 aa11□□□□□ -0.65
PDPN-201ENST00000294489 CARMIL3Q8ND23 1372 aa11□□□□□ -0.65
PDPN-201ENST00000294489 A0A0D9SFI3 127 aa11□□□□□ -0.65
PDPN-201ENST00000294489 ARID4AP29374 1257 aaPredicted RBP11□□□□□ -0.65
PDPN-201ENST00000294489 PUM3Q15397 648 aaKnown RBP11□□□□□ -0.65
PDPN-201ENST00000294489 MAP4K1Q92918 833 aa11□□□□□ -0.65
PDPN-201ENST00000294489 TMX3Q96JJ7 454 aa11□□□□□ -0.65
PDPN-201ENST00000294489 FAM227BQ96M60 508 aa11□□□□□ -0.65
PDPN-201ENST00000294489 SETDB2Q96T68 719 aa11□□□□□ -0.65
PDPN-201ENST00000294489 UPF3BQ9BZI7 483 aaKnown RBP11□□□□□ -0.65
PDPN-201ENST00000294489 SEC31BQ9NQW1 1179 aa11□□□□□ -0.65
PDPN-201ENST00000294489 CNNM1Q9NRU3 951 aa11□□□□□ -0.65
PDPN-201ENST00000294489 RGS17Q9UGC6 210 aaPredicted RBP11□□□□□ -0.65
PDPN-201ENST00000294489 SNX14Q9Y5W7 946 aa11□□□□□ -0.65
PDPN-201ENST00000294489 CCDC171Q6TFL3 1326 aa10.99□□□□□ -0.65
PDPN-201ENST00000294489 EDC3Q96F86 508 aaKnown RBP10.99□□□□□ -0.65
PDPN-201ENST00000294489 PTMSP20962 102 aa10.99□□□□□ -0.65
PDPN-201ENST00000294489 KCNJ4P48050 445 aa10.99□□□□□ -0.65
PDPN-201ENST00000294489 NECTIN1Q15223 517 aa10.99□□□□□ -0.65
PDPN-201ENST00000294489 CCDC158Q5M9N0 1113 aa10.99□□□□□ -0.65
PDPN-201ENST00000294489 LPIN2Q92539 896 aa10.99□□□□□ -0.65
PDPN-201ENST00000294489 ZKSCAN1P17029 563 aaPredicted RBP10.98□□□□□ -0.65
PDPN-201ENST00000294489 PTH1RQ03431 593 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 DNAJC2Q99543 621 aaKnown RBP10.98□□□□□ -0.65
PDPN-201ENST00000294489 LRRC37AA6NMS7 1700 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 IFIT1P09914 478 aaKnown RBP10.98□□□□□ -0.65
PDPN-201ENST00000294489 RXRBP28702 533 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 TM4SF1P30408 202 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 RFC4P35249 363 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 CDC5LQ99459 802 aaKnown RBP10.98□□□□□ -0.65
PDPN-201ENST00000294489 HELLSQ9NRZ9 838 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 BSDC1Q9NW68 430 aaPredicted RBP10.98□□□□□ -0.65
PDPN-201ENST00000294489 TXNRD1Q16881 649 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 TSGA10IPQ3SY00 556 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 ZMYM1Q5SVZ6 1142 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 TPTE2Q6XPS3 522 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 AKT1S1Q96B36 256 aa10.98□□□□□ -0.65
PDPN-201ENST00000294489 ANKRD31Q8N7Z5 1873 aa10.97□□□□□ -0.65
PDPN-201ENST00000294489 LAMA4Q16363 1823 aa10.97□□□□□ -0.65
PDPN-201ENST00000294489 FAM177BA6PVY3 158 aa10.97□□□□□ -0.65
PDPN-201ENST00000294489 GOLGA6L22H0YM25 854 aa10.97□□□□□ -0.65
PDPN-201ENST00000294489 GYS1P13807 737 aa10.97□□□□□ -0.65
PDPN-201ENST00000294489 IGHMBP2P38935 993 aaKnown RBP10.97□□□□□ -0.65
PDPN-201ENST00000294489 PRPF40BQ6NWY9 871 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms