RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 LEO1Q8WVC0 666 aaPredicted RBP12.22□□□□□ -0.45
SKA1-201ENST00000285116 ZSCAN16Q9H4T2 348 aaPredicted RBP12.22□□□□□ -0.45
SKA1-201ENST00000285116 KDM6AO15550 1401 aaPredicted RBP12.22□□□□□ -0.45
SKA1-201ENST00000285116 ATL3Q6DD88 541 aa12.22□□□□□ -0.45
SKA1-201ENST00000285116 NECAB1Q8N987 351 aa12.22□□□□□ -0.45
SKA1-201ENST00000285116 LARP6Q9BRS8 491 aaKnown RBP12.22□□□□□ -0.45
SKA1-201ENST00000285116 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.22□□□□□ -0.45
SKA1-201ENST00000285116 AXIN2Q9Y2T1 843 aa12.22□□□□□ -0.45
SKA1-201ENST00000285116 U3KPZ7 1027 aaPredicted RBP12.22□□□□□ -0.45
SKA1-201ENST00000285116 PALLDQ8WX93 1383 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 GCP02774 474 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 RFX5P48382 616 aaPredicted RBP12.21□□□□□ -0.45
SKA1-201ENST00000285116 RESTQ13127 1097 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 GCKRQ14397 625 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 FSD1Q9BTV5 496 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 METTL22Q9BUU2 404 aaPredicted RBP12.21□□□□□ -0.45
SKA1-201ENST00000285116 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.21□□□□□ -0.45
SKA1-201ENST00000285116 KAT6BQ8WYB5 2073 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 SH3TC1Q8TE82 1336 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 SLFN14P0C7P3 912 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 LIG1P18858 919 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 KCNJ4P48050 445 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 LRP10Q7Z4F1 713 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 CCDC112Q8NEF3 446 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 SMARCC2Q8TAQ2 1214 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 C19orf44Q9H6X5 657 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 TMEM51Q9NW97 253 aa12.21□□□□□ -0.45
SKA1-201ENST00000285116 TJP1Q07157 1748 aa12.21□□□□□ -0.46
SKA1-201ENST00000285116 TNNT1P13805 278 aa12.21□□□□□ -0.46
SKA1-201ENST00000285116 SARM1Q6SZW1 724 aa12.21□□□□□ -0.46
SKA1-201ENST00000285116 ANKRD24Q8TF21 1146 aa12.21□□□□□ -0.46
SKA1-201ENST00000285116 SPATA32Q96LK8 384 aa12.21□□□□□ -0.46
SKA1-201ENST00000285116 TNMDQ9H2S6 317 aa12.21□□□□□ -0.46
SKA1-201ENST00000285116 UBR2Q8IWV8 1755 aa12.21□□□□□ -0.46
SKA1-201ENST00000285116 HMGB1P09429 215 aaKnown RBP12.2□□□□□ -0.46
SKA1-201ENST00000285116 NEXNQ0ZGT2 675 aa12.2□□□□□ -0.46
SKA1-201ENST00000285116 TLR7Q9NYK1 1049 aaKnown RBP12.2□□□□□ -0.46
SKA1-201ENST00000285116 CCDC66A2RUB6 948 aa12.2□□□□□ -0.46
SKA1-201ENST00000285116 CTAGE5O15320 804 aa12.2□□□□□ -0.46
SKA1-201ENST00000285116 NAA16Q6N069 864 aaPredicted RBP12.2□□□□□ -0.46
SKA1-201ENST00000285116 CCDC186Q7Z3E2 898 aa12.2□□□□□ -0.46
SKA1-201ENST00000285116 C16orf45Q96MC5 204 aaPredicted RBP12.2□□□□□ -0.46
SKA1-201ENST00000285116 AGXT2Q9BYV1 514 aa12.2□□□□□ -0.46
SKA1-201ENST00000285116 SLAIN2Q9P270 581 aa12.2□□□□□ -0.46
SKA1-201ENST00000285116 ZNF609O15014 1411 aa12.2□□□□□ -0.46
SKA1-201ENST00000285116 ZNF589Q86UQ0 364 aaPredicted RBP12.19□□□□□ -0.46
SKA1-201ENST00000285116 FBXL16Q8N461 479 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 RGS22Q8NE09 1264 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 KIF18AQ8NI77 898 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 CHMP4CQ96CF2 233 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 HAUS7Q99871 368 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 CBX8Q9HC52 389 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 PAPPAQ13219 1627 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 CSB-PGBD3P0DP91 1061 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 ZNF790Q6PG37 636 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 CCDC8Q9H0W5 538 aaPredicted RBP12.19□□□□□ -0.46
SKA1-201ENST00000285116 SLC52A2Q9HAB3 445 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 DACT1Q9NYF0 836 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 CFAP45Q9UL16 551 aa12.19□□□□□ -0.46
SKA1-201ENST00000285116 ZNF75DP51815 510 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 TERF2Q15554 542 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 TNNI3KQ59H18 835 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 DRC7Q8IY82 874 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 KRT222Q8N1A0 295 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 NEK1Q96PY6 1258 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 GPR108Q9NPR9 543 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 FPGT-TNNI3KV9GXZ4 949 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 PFKFB2O60825 505 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 ZSCAN25Q6NSZ9 544 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 BOLA2Q9H3K6 86 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 KCND1Q9NSA2 647 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 ERBB3P21860 1342 aa12.18□□□□□ -0.46
SKA1-201ENST00000285116 FAM193AP78312 1265 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 FAM182BQ5T319 152 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 PGBD1Q96JS3 809 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 DBNLQ9UJU6 430 aaKnown RBP12.17□□□□□ -0.46
SKA1-201ENST00000285116 PRAMEF22A3QJZ6 481 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 NEMFO60524 1076 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 PTPN12Q05209 780 aaKnown RBP12.17□□□□□ -0.46
SKA1-201ENST00000285116 LRMPQ12912 555 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 MCMDC2Q4G0Z9 681 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 ANO6Q4KMQ2 910 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 RIC3Q7Z5B4 369 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 LUZP1Q86V48 1076 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 ZNF397Q8NF99 534 aaPredicted RBP12.17□□□□□ -0.46
SKA1-201ENST00000285116 RCOR1Q9UKL0 485 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 GOLGA6L4A6NEF3 574 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 COL9A3Q14050 684 aaPredicted RBP12.17□□□□□ -0.46
SKA1-201ENST00000285116 TPD52L1Q16890 204 aaPredicted RBP12.17□□□□□ -0.46
SKA1-201ENST00000285116 BRINP3Q76B58 766 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 DSCC1Q9BVC3 393 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 TAF6LQ9Y6J9 622 aa12.17□□□□□ -0.46
SKA1-201ENST00000285116 SALL1Q9NSC2 1324 aa12.16□□□□□ -0.46
SKA1-201ENST00000285116 UBAP1LF5GYI3 381 aa12.16□□□□□ -0.46
SKA1-201ENST00000285116 ADD1P35611 737 aaKnown RBP12.16□□□□□ -0.46
SKA1-201ENST00000285116 CASP7P55210 303 aa12.16□□□□□ -0.46
SKA1-201ENST00000285116 MRFAP1L1Q96HT8 127 aa12.16□□□□□ -0.46
SKA1-201ENST00000285116 HELLSQ9NRZ9 838 aa12.16□□□□□ -0.46
SKA1-201ENST00000285116 NLRP2Q9NX02 1062 aa12.16□□□□□ -0.46
SKA1-201ENST00000285116 EPHA10Q5JZY3 1008 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms