RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 AP5Z1O43299 807 aa19.68■□□□□ 0.74
VPS54-201ENST00000272322 RXRAP19793 462 aa19.68■□□□□ 0.74
VPS54-201ENST00000272322 HSP90AA2PQ14568 343 aaPredicted RBP19.68■□□□□ 0.74
VPS54-201ENST00000272322 CCDC39Q9UFE4 941 aa19.68■□□□□ 0.74
VPS54-201ENST00000272322 APPP05067 770 aa19.68■□□□□ 0.74
VPS54-201ENST00000272322 DRC7Q8IY82 874 aa19.68■□□□□ 0.74
VPS54-201ENST00000272322 KBTBD3Q8NAB2 608 aa19.68■□□□□ 0.74
VPS54-201ENST00000272322 NCAPD2Q15021 1401 aa19.68■□□□□ 0.74
VPS54-201ENST00000272322 HAUS7Q99871 368 aa19.68■□□□□ 0.74
VPS54-201ENST00000272322 TMOD3Q9NYL9 352 aa19.68■□□□□ 0.74
VPS54-201ENST00000272322 NR1I2O75469 434 aa19.67■□□□□ 0.74
VPS54-201ENST00000272322 IL2RBP14784 551 aa19.67■□□□□ 0.74
VPS54-201ENST00000272322 TTC39AQ5SRH9 613 aa19.67■□□□□ 0.74
VPS54-201ENST00000272322 TNMDQ9H2S6 317 aa19.67■□□□□ 0.74
VPS54-201ENST00000272322 DENND2AQ9ULE3 1009 aa19.67■□□□□ 0.74
VPS54-201ENST00000272322 NUP62CLQ9H1M0 184 aa19.67■□□□□ 0.74
VPS54-201ENST00000272322 CASP7P55210 303 aa19.66■□□□□ 0.74
VPS54-201ENST00000272322 HLFQ16534 295 aa19.66■□□□□ 0.74
VPS54-201ENST00000272322 CCDC144CPQ8IYA2 1237 aa19.66■□□□□ 0.74
VPS54-201ENST00000272322 EYA2O00167 538 aa19.66■□□□□ 0.74
VPS54-201ENST00000272322 POLR3DP05423 398 aaPredicted RBP19.66■□□□□ 0.74
VPS54-201ENST00000272322 ANKRD1Q15327 319 aa19.66■□□□□ 0.74
VPS54-201ENST00000272322 OSBP2Q969R2 916 aa19.66■□□□□ 0.74
VPS54-201ENST00000272322 M0R2C6 588 aa19.65■□□□□ 0.74
VPS54-201ENST00000272322 HSPD1P10809 573 aaKnown RBP19.65■□□□□ 0.74
VPS54-201ENST00000272322 RABL6Q3YEC7 729 aaPredicted RBP19.65■□□□□ 0.74
VPS54-201ENST00000272322 ZNF335Q9H4Z2 1342 aaPredicted RBP19.65■□□□□ 0.74
VPS54-201ENST00000272322 MED1Q15648 1581 aaPredicted RBP19.65■□□□□ 0.74
VPS54-201ENST00000272322 H7C1W4 665 aa19.65■□□□□ 0.74
VPS54-201ENST00000272322 OFD1O75665 1012 aa19.65■□□□□ 0.74
VPS54-201ENST00000272322 SLAIN2Q9P270 581 aa19.65■□□□□ 0.74
VPS54-201ENST00000272322 MED23Q9ULK4 1368 aa19.65■□□□□ 0.74
VPS54-201ENST00000272322 EPB41L2O43491 1005 aaKnown RBP19.64■□□□□ 0.74
VPS54-201ENST00000272322 PDCP20941 246 aa19.64■□□□□ 0.74
VPS54-201ENST00000272322 ZAP70P43403 619 aa19.64■□□□□ 0.74
VPS54-201ENST00000272322 IDH1O75874 414 aaKnown RBP19.64■□□□□ 0.73
VPS54-201ENST00000272322 LEO1Q8WVC0 666 aaPredicted RBP19.64■□□□□ 0.73
VPS54-201ENST00000272322 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.64■□□□□ 0.738e-8■■■□□ 15.1
VPS54-201ENST00000272322 U3KPZ7 1027 aaPredicted RBP19.64■□□□□ 0.73
VPS54-201ENST00000272322 GTF3C6Q969F1 213 aa19.64■□□□□ 0.73
VPS54-201ENST00000272322 MST1RQ04912 1400 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 ANO6Q4KMQ2 910 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 XAGE2Q96GT9 111 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 BTG4Q9NY30 223 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 MAP3K11Q16584 847 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 LDHAL6AQ6ZMR3 332 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 IL17RAQ96F46 866 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 DNAJC25Q9H1X3 360 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 INCENPQ9NQS7 918 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 KDM3BQ7LBC6 1761 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 UQCRHLA0A096LP55 91 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 UQCRHP07919 91 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 KIAA2012Q0VF49 1180 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 METTL24Q5JXM2 366 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 PGBD1Q96JS3 809 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 CNNM1Q9NRU3 951 aa19.63■□□□□ 0.73
VPS54-201ENST00000272322 MAST3O60307 1309 aa19.62■□□□□ 0.73
VPS54-201ENST00000272322 PTPDC1A2A3K4 754 aa19.62■□□□□ 0.73
VPS54-201ENST00000272322 E7EWF7 191 aa19.62■□□□□ 0.73
VPS54-201ENST00000272322 IL15P40933 162 aaPredicted RBP19.62■□□□□ 0.73
VPS54-201ENST00000272322 CSPP1Q1MSJ5 1256 aa19.62■□□□□ 0.73
VPS54-201ENST00000272322 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.62■□□□□ 0.73
VPS54-201ENST00000272322 CCDC192P0DO97 292 aa19.62■□□□□ 0.73
VPS54-201ENST00000272322 PIGBQ92521 554 aa19.62■□□□□ 0.73
VPS54-201ENST00000272322 HMG20BQ9P0W2 317 aa19.62■□□□□ 0.73
VPS54-201ENST00000272322 IQSEC3Q9UPP2 1182 aaPredicted RBP19.62■□□□□ 0.73
VPS54-201ENST00000272322 PCDH11XQ9BZA7 1347 aa19.62■□□□□ 0.73
VPS54-201ENST00000272322 PCDH11YQ9BZA8 1340 aa19.62■□□□□ 0.73
VPS54-201ENST00000272322 CCDC158Q5M9N0 1113 aa19.61■□□□□ 0.73
VPS54-201ENST00000272322 KCNB2Q92953 911 aa19.61■□□□□ 0.73
VPS54-201ENST00000272322 TYRO3Q06418 890 aa19.61■□□□□ 0.73
VPS54-201ENST00000272322 IFIT5Q13325 482 aaKnown RBP19.61■□□□□ 0.73
VPS54-201ENST00000272322 PUS7LQ9H0K6 701 aaKnown RBP19.61■□□□□ 0.73
VPS54-201ENST00000272322 WDR17Q8IZU2 1322 aa19.61■□□□□ 0.73
VPS54-201ENST00000272322 KRT32Q14532 448 aa19.61■□□□□ 0.73
VPS54-201ENST00000272322 DHX32Q7L7V1 743 aaKnown RBP19.6■□□□□ 0.73
VPS54-201ENST00000272322 CCDC82Q8N4S0 544 aa19.6■□□□□ 0.73
VPS54-201ENST00000272322 TMEM87AQ8NBN3 555 aa19.6■□□□□ 0.73
VPS54-201ENST00000272322 ACSBG1Q96GR2 724 aa19.6■□□□□ 0.73
VPS54-201ENST00000272322 GREM2Q9H772 168 aa19.6■□□□□ 0.73
VPS54-201ENST00000272322 ISM2Q6H9L7 571 aa19.6■□□□□ 0.73
VPS54-201ENST00000272322 ME1P48163 572 aa19.6■□□□□ 0.73
VPS54-201ENST00000272322 TRIM5Q9C035 493 aa19.6■□□□□ 0.73
VPS54-201ENST00000272322 KIF6Q6ZMV9 814 aa19.59■□□□□ 0.73
VPS54-201ENST00000272322 TOMM22Q9NS69 142 aa19.59■□□□□ 0.73
VPS54-201ENST00000272322 NRBP1Q9UHY1 535 aa19.59■□□□□ 0.73
VPS54-201ENST00000272322 TRMT112Q9UI30 125 aaKnown RBP19.59■□□□□ 0.73
VPS54-201ENST00000272322 RNF113AO15541 343 aaKnown RBP19.59■□□□□ 0.73
VPS54-201ENST00000272322 CCDC191Q8NCU4 936 aa19.59■□□□□ 0.73
VPS54-201ENST00000272322 SLIT3O75094 1523 aa19.58■□□□□ 0.73
VPS54-201ENST00000272322 CTDNEP1O95476 244 aa19.58■□□□□ 0.72
VPS54-201ENST00000272322 SMIM5Q71RC9 77 aa19.58■□□□□ 0.72
VPS54-201ENST00000272322 USP28Q96RU2 1077 aa19.58■□□□□ 0.72
VPS54-201ENST00000272322 ADAMTS2O95450 1211 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 FGAP02671 866 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 KCNQ4P56696 695 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 TCIRG1Q13488 830 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 CHMP4CQ96CF2 233 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 PTGS1P23219 599 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 ITGA6P23229 1130 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms