RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 PNMA2Q9UL42 364 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 NR1I2O75469 434 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 ARHGEF25Q86VW2 580 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 CCDC82Q8N4S0 544 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 SPHKAPQ2M3C7 1700 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 POLR3AO14802 1390 aaPredicted RBP9.06□□□□□ -0.96
USP3-201ENST00000268049 CCDC196A0A1B0GTZ2 297 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 PABPN1LA6NDY0 278 aaKnown RBP9.06□□□□□ -0.96
USP3-201ENST00000268049 STIM1Q13586 685 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 IMMTQ16891 758 aaKnown RBP9.06□□□□□ -0.96
USP3-201ENST00000268049 STXBP4Q6ZWJ1 553 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 RTKN2Q8IZC4 609 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 RAD50Q92878 1312 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 PRC1O43663 620 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 KIF5BP33176 963 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 SLFN5Q08AF3 891 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 BIRC2Q13490 618 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 DNAAF4Q8WXU2 420 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 ALKQ9UM73 1620 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 ZC3H13Q5T200 1668 aaKnown RBP9.06□□□□□ -0.96
USP3-201ENST00000268049 PPP2R3CQ969Q6 453 aa9.06□□□□□ -0.96
USP3-201ENST00000268049 MAGEC2Q9UBF1 373 aaPredicted RBP9.06□□□□□ -0.96
USP3-201ENST00000268049 USP6P35125 1406 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 ERLIN1O75477 346 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 SKIV2LQ15477 1246 aaKnown RBP9.05□□□□□ -0.96
USP3-201ENST00000268049 TMEM266Q2M3C6 531 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 TTC6Q86TZ1 520 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 NUTM1Q86Y26 1132 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 IREB2P48200 963 aaKnown RBP9.05□□□□□ -0.96
USP3-201ENST00000268049 FER1L4A9Z1Z3 1794 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 BCAR3O75815 825 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 CNGA1P29973 690 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 IL13P35225 146 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 JMYQ8N9B5 988 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 CAGE1Q8TC20 777 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 LRRC45Q96CN5 670 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 MBIPQ9NS73 344 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 PPRC1Q5VV67 1664 aaKnown RBP9.05□□□□□ -0.96
USP3-201ENST00000268049 ANKRD13DQ6ZTN6 518 aa9.05□□□□□ -0.96
USP3-201ENST00000268049 SPINK5Q9NQ38 1064 aaPredicted RBP9.05□□□□□ -0.96
USP3-201ENST00000268049 UBXN2AP68543 259 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 AACSQ86V21 672 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 MINDY4BA8MYZ0 360 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 WDR17Q8IZU2 1322 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 SRGAP3O43295 1099 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 ZBED4O75132 1171 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 FMNL1O95466 1100 aaPredicted RBP9.04□□□□□ -0.96
USP3-201ENST00000268049 ALDH1L2Q3SY69 923 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 DDX11Q96FC9 970 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 ECM2O94769 699 aaPredicted RBP9.04□□□□□ -0.96
USP3-201ENST00000268049 ATP7BP35670 1465 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 IL16Q14005 1332 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 NAT10Q9H0A0 1025 aaKnown RBP9.04□□□□□ -0.96
USP3-201ENST00000268049 RNF181Q9P0P0 153 aa9.04□□□□□ -0.96
USP3-201ENST00000268049 KIF20AO95235 890 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 FLIIQ13045 1269 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 TBC1D22AQ8WUA7 517 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 HOMER2Q9NSB8 354 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 MAP3K2Q9Y2U5 619 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 PER1O15534 1290 aaPredicted RBP9.03□□□□□ -0.96
USP3-201ENST00000268049 FAM107BQ9H098 131 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 C1orf115Q9H7X2 142 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 NPC1L1Q9UHC9 1359 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 DYNC1I1O14576 645 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 PICALMQ13492 652 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 COPS6Q7L5N1 327 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 SPC24Q8NBT2 197 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 SAMM50Q9Y512 469 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 INSRP06213 1382 aa9.03□□□□□ -0.96
USP3-201ENST00000268049 ERVV-2B6SEH9 535 aa9.02□□□□□ -0.96
USP3-201ENST00000268049 ANXA1P04083 346 aa9.02□□□□□ -0.96
USP3-201ENST00000268049 SSBP05455 408 aaKnown RBP eCLIP9.02□□□□□ -0.96
USP3-201ENST00000268049 LDHBP07195 334 aaKnown RBP9.02□□□□□ -0.96
USP3-201ENST00000268049 ANKRD1Q15327 319 aa9.02□□□□□ -0.96
USP3-201ENST00000268049 CCDC73Q6ZRK6 1079 aa9.02□□□□□ -0.96
USP3-201ENST00000268049 TICAM2Q86XR7 235 aa9.02□□□□□ -0.96
USP3-201ENST00000268049 XAGE3Q8WTP9 111 aa9.02□□□□□ -0.96
USP3-201ENST00000268049 PHACTR3Q96KR7 559 aa9.02□□□□□ -0.96
USP3-201ENST00000268049 E9PCH4 1651 aa9.02□□□□□ -0.96
USP3-201ENST00000268049 PARD3Q8TEW0 1356 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 SSR1P43307 286 aaKnown RBP9.02□□□□□ -0.97
USP3-201ENST00000268049 KAT14Q9H8E8 782 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 MYO6Q9UM54 1294 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 GTF2F1P35269 517 aaKnown RBP eCLIP9.02□□□□□ -0.97
USP3-201ENST00000268049 OLFM4Q6UX06 510 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 CDC37L1Q7L3B6 337 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 PNMA3Q9UL41 463 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 KCNH4Q9UQ05 1017 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 PIK3C2BO00750 1634 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 PRPF40AO75400 957 aaKnown RBP9.02□□□□□ -0.97
USP3-201ENST00000268049 KRT32Q14532 448 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 SLC27A3Q5K4L6 730 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 ZNF790Q6PG37 636 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 TMCO3Q6UWJ1 677 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 TXLNBQ8N3L3 684 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 GTPBP4Q9BZE4 634 aaKnown RBP9.02□□□□□ -0.97
USP3-201ENST00000268049 SLC52A2Q9HAB3 445 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 CHPF2Q9P2E5 772 aa9.02□□□□□ -0.97
USP3-201ENST00000268049 TNS3Q68CZ2 1445 aa9.01□□□□□ -0.97
USP3-201ENST00000268049 PI4KAP2A4QPH2 592 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms